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view summarize_gff_by_attribute.xml @ 11:5366d5ea04bc draft
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author | petr-novak |
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date | Fri, 04 Aug 2023 12:35:32 +0000 |
parents | b53f5a456d01 |
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<tool id="summarize_gff_by_attribute" name="Create summary on GFF3 attribute" version="0.1.0" python_template_version="3.5"> <requirements> <requirement type="package">bioconductor-rtracklayer</requirement> </requirements> <required_files> <include type="literal" path="summarize_gff_by_attribute.R"/> </required_files> <command detect_errors="exit_code"><![CDATA[ Rscript $__tool_directory__/summarize_gff_by_attribute.R '$input_gff' $attribute_name '$output_table' ]]></command> <inputs> <param type="data" name="input_gff" format="gff" label="Input GFF"> <sanitizer invalid_char=""> <valid initial="string.ascii_letters,string.digits"> <add value="_" /> </valid> </sanitizer> </param> <param type="text" name="attribute_name" label="Name of attribute to summarize" optional="false" default="Name"/> </inputs> <outputs> <data name="output_table" format="tsv" /> </outputs> <help><![CDATA[ Calculate summary statistics on GFF3 attribute. Summary included total number of features and total lenght per attribute value. ]]></help> </tool>