Mercurial > repos > petr-novak > repeatexplorer2_cerit

comparison repex_tarean.xml @ 8:a93b7e080db4 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author petr-novak
date Wed, 22 May 2024 11:48:36 +0000
parents ed5a72d4693d
children
comparison
equal deleted inserted replaced
7:919b0e127350 8:a93b7e080db4
1 <tool id="tarean" name="Tandem Repeat Analyzer" version="2.3.8.1" > 1 <tool id="tarean" name="Tandem Repeat Analyzer" version="2.3.8.2" >
2 <stdio> 2 <stdio>
3 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> 3 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
4 <regex match="error" source="stderr" level="fatal" description="Unknown error" /> 4 <regex match="error" source="stderr" level="fatal" description="Unknown error" />
5 <regex match="warning" source="stderr" level="warning" description="Unknown warning" /> 5 <regex match="warning" source="stderr" level="warning" description="Unknown warning" />
6 <exit_code range="1:" level="fatal" description="Error" /> 6 <exit_code range="1:" level="fatal" description="Error" />
53 cat stdout.log >> ${log} ; 53 cat stdout.log >> ${log} ;
54 echo "STDERR CONTENT:" >> ${log} ; 54 echo "STDERR CONTENT:" >> ${log} ;
55 cat stderr.log >> ${log} &amp;&amp; 55 cat stderr.log >> ${log} &amp;&amp;
56 \${REPEX}/stderr_filter.py stderr.log &amp;&amp; 56 \${REPEX}/stderr_filter.py stderr.log &amp;&amp;
57 cd tarean_output &amp;&amp; 57 cd tarean_output &amp;&amp;
58 zip -r ${ReportArchive}.zip * &amp;&amp; 58 zip -fz -r ${ReportArchive}.zip * &amp;&amp;
59 mv ${ReportArchive}.zip ${ReportArchive} &amp;&amp; 59 mv ${ReportArchive}.zip ${ReportArchive} &amp;&amp;
60 cp index.html ${ReportFile} &amp;&amp; 60 cp index.html ${ReportFile} &amp;&amp;
61 mkdir ${ReportFile.files_path} &amp;&amp; 61 mkdir ${ReportFile.files_path} &amp;&amp;
62 cp -r --parents libdir ${ReportFile.files_path} &amp;&amp; 62 cp -r --parents libdir ${ReportFile.files_path} &amp;&amp;
63 cp -r --parents seqclust/clustering/superclusters ${ReportFile.files_path} &amp;&amp; 63 cp -r --parents seqclust/clustering/superclusters ${ReportFile.files_path} &amp;&amp;