--- a/repex_full_clustering.xml	Fri May 27 12:00:03 2022 +0000
+++ b/repex_full_clustering.xml	Wed May 22 11:48:16 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8.1" >
+<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8.2" >
     <stdio>
       <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" />
       <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
@@ -62,7 +62,7 @@
       cat stderr.log >> ${log} &amp;&amp;
       \${REPEX}/stderr_filter.py stderr.log &amp;&amp;
       cd tarean_output &amp;&amp;
-      zip -r  ${ReportArchive}.zip * &amp;&amp;
+      zip -fz -r  ${ReportArchive}.zip * &amp;&amp;
       mv ${ReportArchive}.zip ${ReportArchive} &amp;&amp;
       cp index.html ${ReportFile} &amp;&amp;
       mkdir ${ReportFile.files_path} &amp;&amp;