Mercurial > repos > petr-novak > repeatexplorer2_testing

comparison repex_full_clustering.xml @ 15:15185fe48bf8 draft

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author petr-novak
date Wed, 20 Dec 2023 14:24:48 +0000
parents ba67036e6b3c
children 5cca2c9aa4ad
comparison
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14:ba67036e6b3c 15:15185fe48bf8
1 <tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8.2" > 1 <tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8.3" >
2 <stdio> 2 <stdio>
3 <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" /> 3 <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" />
4 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> 4 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
5 <regex match="error" source="stderr" level="fatal" description="Unknown error" /> 5 <regex match="error" source="stderr" level="fatal" description="Unknown error" />
6 <regex match="Warning" source="stderr" level="warning" description="Unknown error" /> 6 <regex match="Warning" source="stderr" level="warning" description="Unknown error" />
61 61
62 <conditional name="read_sampling"> 62 <conditional name="read_sampling">
63 <param name="do_sampling" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Read sampling" help="Use this option if you want to analyze only a part of the reads" /> 63 <param name="do_sampling" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Read sampling" help="Use this option if you want to analyze only a part of the reads" />
64 <when value="false"> 64 <when value="false">
65 <!-- pass --> 65 <!-- pass -->
66 <param name="sample" label="Sample size" hidden="True" type="integer" value="0" help="Number of analyzed reads"/> 66 <param name="sample" label="Sample size" type="hidden" value="0" help="Number of analyzed reads"/>
67 </when> 67 </when>
68 <when value="true"> 68 <when value="true">
69 <param name="sample" label="Sample size" type="integer" value="500000" min="10000" help="Number of analyzed reads"/> 69 <param name="sample" label="Sample size" type="integer" value="500000" min="10000" help="Number of analyzed reads"/>
70 </when> 70 </when>
71 </conditional> 71 </conditional>