Mercurial > repos > petr-novak > repeatexplorer2_testing

comparison repex_tarean.xml @ 5:397394c00bf7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author petr-novak
date Fri, 09 Apr 2021 08:09:53 +0000
parents 72c028e3e70e
children 4b3af335dca8
comparison
equal deleted inserted replaced
4:72c028e3e70e 5:397394c00bf7
95 </param> 95 </param>
96 </conditional> 96 </conditional>
97 </when> 97 </when>
98 </conditional> 98 </conditional>
99 99
100 100 <conditional name="queue_definition">
101 <param name="queue_select" type="select" label="Select queue">
102 <option value="basic_fast_queue">basic (max runtime 2 days, 4 GB RAM)</option>
103 <option value="long_slow_queue">long (max runtime 2 weeks, 64 GB RAM)</option>
104 <option value="extra_long_slow_queue">extra long (max runtime 4 weeks, 64 GB RAM)</option>
105 </param>
106 <when value="basic_fast_queue">
107 <param name="queue_specification" type="text" label="Modify parameters (optional)"
108 value="-l select=1:ncpus=10:mem=32gb:scratch_local=50gb -l walltime=48:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=4000000,TAREAN_CPU=4" />
109 </when>
110
111 <when value="long_slow_queue">
112 <param name="queue_specification" type="text" label="Modify parameters (optional)"
113 value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=336:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" />
114 </when>
115 <when value="extra_long_slow_queue">
116 <param name="queue_specification" type="text" label="Modify parameters (optional)"
117 value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=720:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" />
118 </when>
119 </conditional>
120
121
101 122
102 </inputs> 123 </inputs>
103 <outputs> 124 <outputs>
104 <data name="log" format="txt" label="TAREAN log file"/> 125 <data name="log" format="txt" label="TAREAN log file"/>
105 <data name="ReportArchive" format="zip" label="TAREAN Archive with HTML report from data ${FastaFile.hid}"/> 126 <data name="ReportArchive" format="zip" label="TAREAN Archive with HTML report from data ${FastaFile.hid}"/>