Mercurial > repos > petr-novak > repeatexplorer2_testing

comparison repex_full_clustering.xml @ 3:d1f67a13b70f draft

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Uploaded
author petr-novak
date Fri, 24 Jul 2020 07:32:09 -0400
parents 349b197133dc
children 72c028e3e70e
comparison
equal deleted inserted replaced
2:349b197133dc 3:d1f67a13b70f
1 <tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8" > 1 <tool id="repeatexplorer2_dev" name="RepeatExplorer2 clustering: " version="2.3.8" >
2 <stdio> 2 <stdio>
3 <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" /> 3 <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" />
4 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> 4 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
5 <regex match="error" source="stderr" level="fatal" description="Unknown error" /> 5 <regex match="error" source="stderr" level="fatal" description="Unknown error" />
6 <regex match="Warning" source="stderr" level="warning" description="Unknown error" /> 6 <regex match="Warning" source="stderr" level="warning" description="Unknown error" />
32 <requirement type="package">r-optparse</requirement> 32 <requirement type="package">r-optparse</requirement>
33 <requirement type="package">r-dbi</requirement> 33 <requirement type="package">r-dbi</requirement>
34 <requirement type="package">r-rsqlite</requirement> 34 <requirement type="package">r-rsqlite</requirement>
35 <requirement type="package">r-rserve</requirement> 35 <requirement type="package">r-rserve</requirement>
36 <requirement type="package">bioconductor-biostrings</requirement> 36 <requirement type="package">bioconductor-biostrings</requirement>
37 <requirement type="package" version="2.3.8">repex_tarean</requirement> 37 <requirement type="package" version="2.3.8">repex_tarean_dev</requirement>
38 <requirement type="set_environment">REPEX</requirement> 38 <requirement type="set_environment">REPEX</requirement>
39 <requirement type="set_environment">REPEX_VERSION</requirement> 39 <requirement type="set_environment">REPEX_VERSION</requirement>
40 <requirement type="package" version="0.9.1" >pyrserve</requirement> 40 <requirement type="package" version="0.9.1" >pyrserve</requirement>
41 </requirements> 41 </requirements>
42 <command > 42 <command >