Mercurial > repos > petr-novak > repeatexplorer2_testing

comparison repex_tarean.xml @ 27:792914356c37 draft default tip

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author petr-novak
date Tue, 05 Nov 2024 13:48:51 +0000
parents a27646c27090
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26:e6eba137691f 27:792914356c37
1 <tool id="tarean" name="Tandem Repeat Analyzer (TAREAN)" version="2.3.11.1" > 1 <tool id="tarean" name="Tandem Repeat Analyzer (TAREAN)" version="2.3.12.1" >
2 <stdio> 2 <stdio>
3 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> 3 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
4 <regex match="error" source="stderr" level="fatal" description="Unknown error" /> 4 <regex match="error" source="stderr" level="fatal" description="Unknown error" />
5 <regex match="warning" source="stderr" level="warning" description="Unknown warning" /> 5 <regex match="warning" source="stderr" level="warning" description="Unknown warning" />
6 <exit_code range="1:" level="fatal" description="Error" /> 6 <exit_code range="1:" level="fatal" description="Error" />
7 </stdio> 7 </stdio>
8 <description>Identification of genomic tandem repeats from NGS data</description> 8 <description>Identification of genomic tandem repeats from NGS data</description>
9 <requirements> 9 <requirements>
10 <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.11-579a65d</container> 10 <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.12-7a7dc9e</container>
11 </requirements> 11 </requirements>
12 <command detect_errors="exit_code"> 12 <command detect_errors="exit_code">
13 export PYTHONHASHSEED=0; 13 export PYTHONHASHSEED=0;
14 export TAREAN_CPU=\$GALAXY_SLOTS; 14 export TAREAN_CPU=\$GALAXY_SLOTS;
15 export TAREAN_MAX_MEM=\$((GALAXY_MEMORY_MB*1024)); 15 export TAREAN_MAX_MEM=\$((GALAXY_MEMORY_MB*1024));