Mercurial > repos > petr-novak > repeatexplorer2_testing
diff repex_tarean.xml @ 11:1d1dc045695e draft
Uploaded
| author | petr-novak |
|---|---|
| date | Thu, 27 Jul 2023 08:35:12 +0000 |
| parents | ffe53359f758 |
| children | a205a0b8963a |
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--- a/repex_tarean.xml Thu Jul 27 08:34:54 2023 +0000 +++ b/repex_tarean.xml Thu Jul 27 08:35:12 2023 +0000 @@ -34,16 +34,16 @@ zip -r ${ReportArchive}.zip * && mv ${ReportArchive}.zip ${ReportArchive} && cp index.html ${ReportFile} && - mkdir ${ReportFile.files_path} && - cp -r --parents libdir ${ReportFile.files_path} && - cp -r --parents seqclust/clustering/superclusters ${ReportFile.files_path} && - cp -r --parents seqclust/clustering/clusters ${ReportFile.files_path} && - cp seqclust/clustering/hitsort.cls ${ReportFile.files_path}/seqclust/clustering/hitsort.cls && - cp *.png ${ReportFile.files_path}/ && - cp *.csv ${ReportFile.files_path}/ && - cp *.html ${ReportFile.files_path}/ && - cp *.css ${ReportFile.files_path}/ && - cp *.fasta ${ReportFile.files_path}/ 2>>$log && rm -r ../tarean_output || : + mkdir -p ${ReportFile.extra_files_path} && + cp -r --parents libdir ${ReportFile.extra_files_path} && + cp -r --parents seqclust/clustering/superclusters ${ReportFile.extra_files_path} && + cp -r --parents seqclust/clustering/clusters ${ReportFile.extra_files_path} && + cp seqclust/clustering/hitsort.cls ${ReportFile.extra_files_path}/seqclust/clustering/hitsort.cls && + cp *.png ${ReportFile.extra_files_path}/ && + cp *.csv ${ReportFile.extra_files_path}/ && + cp *.html ${ReportFile.extra_files_path}/ && + cp *.css ${ReportFile.extra_files_path}/ && + cp *.fasta ${ReportFile.extra_files_path}/ 2>>$log && rm -r ../tarean_output || : </command>