Mercurial > repos > petr-novak > repeatexplorer2_testing

diff repex_full_clustering.xml @ 10:3c121bee9253 draft

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author petr-novak
date Thu, 27 Jul 2023 08:34:54 +0000
parents 319156f85093
children 1eefa5b3e8b9
line wrap: on
line diff
--- a/repex_full_clustering.xml	Mon Jul 10 10:22:18 2023 +0000
+++ b/repex_full_clustering.xml	Thu Jul 27 08:34:54 2023 +0000
@@ -40,16 +40,16 @@
       zip -r  ${ReportArchive}.zip * &&
       mv  ${ReportArchive}.zip ${ReportArchive} &&
       cp index.html ${ReportFile} &&
-      mkdir -p ${ReportFile.files_path} &&
-      cp -r --parents libdir ${ReportFile.files_path} &&
-      cp -r --parents seqclust/clustering/superclusters ${ReportFile.files_path} &&
-      cp -r --parents seqclust/clustering/clusters ${ReportFile.files_path} &&
-      cp seqclust/clustering/hitsort.cls ${ReportFile.files_path}/seqclust/clustering/hitsort.cls &&
-      cp *.png ${ReportFile.files_path}/ &&
-      cp *.csv ${ReportFile.files_path}/ &&
-      cp *.html ${ReportFile.files_path}/  &&
-      cp *.css ${ReportFile.files_path}/  &&
-      cp *.fasta ${ReportFile.files_path}/ 2>>$log  && rm -r ../tarean_output || :
+      mkdir -p ${ReportFile.extra_files_path} &&
+      cp -r --parents libdir ${ReportFile.extra_files_path} &&
+      cp -r --parents seqclust/clustering/superclusters ${ReportFile.extra_files_path} &&
+      cp -r --parents seqclust/clustering/clusters ${ReportFile.extra_files_path} &&
+      cp seqclust/clustering/hitsort.cls ${ReportFile.extra_files_path}/seqclust/clustering/hitsort.cls &&
+      cp *.png ${ReportFile.extra_files_path}/ &&
+      cp *.csv ${ReportFile.extra_files_path}/ &&
+      cp *.html ${ReportFile.extra_files_path}/  &&
+      cp *.css ${ReportFile.extra_files_path}/  &&
+      cp *.fasta ${ReportFile.extra_files_path}/ 2>>$log  && rm -r ../tarean_output || :
 
     </command>
  <inputs>