# HG changeset patch
# User petr-novak
# Date 1706543905 0
# Node ID 5cca2c9aa4adc76734b8d9e80f6a5c4e57fbde65
# Parent  20ef42e81eeb133064a203b67b45130d047cf672
Uploaded

diff -r 20ef42e81eeb -r 5cca2c9aa4ad repex_full_clustering.xml
--- a/repex_full_clustering.xml	Wed Dec 20 14:25:46 2023 +0000
+++ b/repex_full_clustering.xml	Mon Jan 29 15:58:25 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8.3" >
+<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8.4" >
     <stdio>
       <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" />
       <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
@@ -13,7 +13,9 @@
 <command>
       export PYTHONHASHSEED=0;
       export TAREAN_CPU=\$GALAXY_SLOTS;
-      export TAREAN_MAX_MEM=\$GALAXY_MEMORY_MB;
+      export TAREAN_MAX_MEM=\$((GALAXY_MEMORY_MB*1024));
+      echo \$GALAXY_MEMORY_MB;
+      echo "TAREAN_MAX_MEM=\$TAREAN_MAX_MEM" ;
       seqclust --sample ${read_sampling.sample} --output_dir=tarean_output --logfile=${log} --cleanup $paired --taxon $taxon
 
       #if $advanced_options.advanced: