Mercurial > repos > petr-novak > repeatexplorer2_testing
changeset 19:3d0ba5734776 draft
Uploaded
| author | petr-novak |
|---|---|
| date | Thu, 01 Feb 2024 09:44:37 +0000 |
| parents | 4308d3e572ee |
| children | 19a3d199db8f |
| files | repex_tarean.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/repex_tarean.xml Thu Feb 01 09:43:43 2024 +0000 +++ b/repex_tarean.xml Thu Feb 01 09:44:37 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="tarean" name="Tandem Repeat Analyzer" version="2.3.8.3" > +<tool id="tarean" name="Tandem Repeat Analyzer" version="2.3.9.1" > <stdio> <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> <regex match="error" source="stderr" level="fatal" description="Unknown error" /> @@ -7,12 +7,12 @@ </stdio> <description>Identification of genomic tandem repeats from NGS data</description> <requirements> - <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.8-dbaa07f</container> + <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.9-579a65d</container> </requirements> <command detect_errors="exit_code"> export PYTHONHASHSEED=0; export TAREAN_CPU=\$GALAXY_SLOTS; - export TAREAN_MAX_MEM=\$GALAXY_MEMORY_MB; + export TAREAN_MAX_MEM=\$((GALAXY_MEMORY_MB*1024)); seqclust --paired --sample ${read_sampling.sample} --output_dir=tarean_output --logfile=${log} --cleanup --tarean_mode #if $advanced_options.advanced: --mincl $advanced_options.size_threshold $advanced_options.keep_names $advanced_options.automatic_filtering -M $advanced_options.merging