Mercurial > repos > petr-novak > repeatrxplorer

comparison Makefile @ 0:1d1b9e1b2e2f draft

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author petr-novak
date Thu, 19 Dec 2019 10:24:45 -0500
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-1:000000000000 0:1d1b9e1b2e2f
1 #!/bin/bash
2
3 CC=g++
4 CFLAGS= -ansi -O5 -Wall
5 LDFLAGS= -ansi -lm -Wall
6 EXEC=bin/louvain_community bin/louvain_convert bin/louvain_hierarchy
7 OBJ1= louvain/graph_binary.o louvain/community.o
8 OBJ2= louvain/graph.o
9
10 DNA_DB=databases/dna_database_masked.fasta.nhr
11 PROT_DB=re_databases/protein_database_viridiplantae_v3.0.fasta.phr
12 TRNA_DB=databases/tRNA_database.fasta.nhr
13
14
15 all: $(EXEC) $(DNA_DB) $(PROT_DB) $(TRNA_DB)
16
17 bin/louvain_community : $(OBJ1) louvain/main_community.o
18 $(CC) -o $@ $^ $(LDFLAGS)
19
20 bin/louvain_convert : $(OBJ2) louvain/main_convert.o
21 $(CC) -o $@ $^ $(LDFLAGS)
22
23 bin/louvain_hierarchy : louvain/main_hierarchy.o
24 $(CC) -o $@ $^ $(LDFLAGS)
25
26 $(DNA_DB) : databases/dna_database_masked.fasta
27 makeblastdb -in databases/dna_database_masked.fasta -out databases/dna_database_masked.fasta -dbtype nucl
28
29 $(TRNA_DB) : databases/tRNA_database.fasta
30 makeblastdb -in databases/tRNA_database.fasta -out databases/tRNA_database.fasta -dbtype nucl
31
32 $(PROT_DB) : config.py
33 ./fetch_databases.sh
34
35 dna_database: $(DFASTA)
36 ##########################################
37 # Generic rules
38 ##########################################
39
40 %.o: %.cpp %.h
41 $(CC) -o $@ -c $< $(CFLAGS)
42
43 %.o: %.cpp
44 $(CC) -o $@ -c $< $(CFLAGS)
45
46 clean:
47 rm -f *.o *~ $(EXEC)