Mercurial > repos > petr-novak > repeatrxplorer

comparison repex_full_clustering.xml @ 10:7d88d9fabe99 draft

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author petr-novak
date Mon, 06 Jan 2020 10:06:22 -0500
parents 48704d3ce3a6
children 3b1ebd937035
comparison
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9:c884df88593f 10:7d88d9fabe99
57 ${FastaFile} >stdout.log 2> stderr.log ; 57 ${FastaFile} >stdout.log 2> stderr.log ;
58 echo "STDOUT CONTENT:" >> ${log} ; 58 echo "STDOUT CONTENT:" >> ${log} ;
59 cat stdout.log >> ${log} ; 59 cat stdout.log >> ${log} ;
60 echo "STDERR CONTENT:" >> ${log}; 60 echo "STDERR CONTENT:" >> ${log};
61 cat stderr.log >> ${log} && 61 cat stderr.log >> ${log} &&
62 \${REPEX}/stderr_filter.py stderr.log &&
62 cd tarean_output && 63 cd tarean_output &&
63 zip -r ${ReportArchive}.zip * && 64 zip -r ${ReportArchive}.zip * &&
64 mv ${ReportArchive}.zip ${ReportArchive} && 65 mv ${ReportArchive}.zip ${ReportArchive} &&
65 cp index.html ${ReportFile} && 66 cp index.html ${ReportFile} &&
66 mkdir ${ReportFile.files_path} && 67 mkdir ${ReportFile.files_path} &&