Mercurial > repos > petr-novak > repeatrxplorer

comparison repex_tarean.xml @ 9:c884df88593f draft

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Uploaded
author petr-novak
date Mon, 06 Jan 2020 10:05:59 -0500
parents 07bacdf2d9f6
children 3b1ebd937035
comparison
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8:48704d3ce3a6 9:c884df88593f
50 ${FastaFile} >stdout.log 2> stderr.log ; 50 ${FastaFile} >stdout.log 2> stderr.log ;
51 echo "STDOUT CONTENT:" >> ${log} ; 51 echo "STDOUT CONTENT:" >> ${log} ;
52 cat stdout.log >> ${log} ; 52 cat stdout.log >> ${log} ;
53 echo "STDERR CONTENT:" >> ${log} ; 53 echo "STDERR CONTENT:" >> ${log} ;
54 cat stderr.log >> ${log} && 54 cat stderr.log >> ${log} &&
55 ${__tool_directory__}/stderr_filter.py stderr.log && 55 \${REPEX}/stderr_filter.py stderr.log &&
56 cd tarean_output && 56 cd tarean_output &&
57 zip -r ${ReportArchive}.zip * && 57 zip -r ${ReportArchive}.zip * &&
58 mv ${ReportArchive}.zip ${ReportArchive} && 58 mv ${ReportArchive}.zip ${ReportArchive} &&
59 cp index.html ${ReportFile} && 59 cp index.html ${ReportFile} &&
60 mkdir ${ReportFile.files_path} && 60 mkdir ${ReportFile.files_path} &&