Mercurial > repos > petr-novak > tidecluster

comparison tidecluster.xml @ 12:a0f57cfa1bb7 draft default tip

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planemo upload for repository https://github.com/kavonrtep/galaxy_packages commit 0e706a5b6d79e3b33bdc226d806f0fefe718c57f-dirty
author petr-novak
date Wed, 06 Nov 2024 07:16:14 +0000
parents 971dbc97e607
children
comparison
equal deleted inserted replaced
11:30a8a954dd93 12:a0f57cfa1bb7
31 if [ -d tidecluster_kite ]; then cp -r tidecluster_kite ${tarean_report.extra_files_path}/; fi 31 if [ -d tidecluster_kite ]; then cp -r tidecluster_kite ${tarean_report.extra_files_path}/; fi
32 && 32 &&
33 if [ -f tidecluster_kite_report.html ]; then cp tidecluster_kite_report.html ${tarean_report.extra_files_path}/; fi 33 if [ -f tidecluster_kite_report.html ]; then cp tidecluster_kite_report.html ${tarean_report.extra_files_path}/; fi
34 && 34 &&
35 if [ -f tidecluster_tarean_report.html ]; then cp tidecluster_tarean_report.html ${tarean_report.extra_files_path}/; fi 35 if [ -f tidecluster_tarean_report.html ]; then cp tidecluster_tarean_report.html ${tarean_report.extra_files_path}/; fi
36
37 && 36 &&
38 if [ -f tidecluster_consensus_dimer_library.fasta ]; then cp tidecluster_consensus_dimer_library.fasta ${trc_library}; fi 37 if [ -f tidecluster_consensus_dimer_library.fasta ]; then cp tidecluster_consensus_dimer_library.fasta ${trc_library}; fi
38 &&
39 if [ -f tidecluster_trc_superfamilies.html ]; then cp tidecluster_trc_superfamilies.html ${tarean_report.extra_files_path}/; fi
40 &&
41 if [ -d dotplots ]; then cp -r dotplots ${tarean_report.extra_files_path}/; fi
39 && 42 &&
40 zip -r output.zip * 43 zip -r output.zip *
41 #if $library: 44 #if $library:
42 && 45 &&
43 cp tidecluster_annotation.gff3 '$gff3_annotation' 46 cp tidecluster_annotation.gff3 '$gff3_annotation'