Mercurial > repos > pieterlukasse > nist_wrapper

comparison nist_wrapper.xml @ 3:910ebd2a6826

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fix
author pieter.lukasse@wur.nl
date Thu, 22 Jan 2015 16:59:59 +0100
parents f6da901ffff8
children 266b64154f57
comparison
equal deleted inserted replaced
2:f6da901ffff8 3:910ebd2a6826
14 nist_wrapper.py 14 nist_wrapper.py
15 "~/.wine/drive_c/NIST" 15 "~/.wine/drive_c/NIST"
16 $nistIniFile 16 $nistIniFile
17 $spectraFile 17 $spectraFile
18 $outputFile 18 $outputFile
19 $outputFileFinal
20 $htmlReportFile
21 $htmlReportFile.files_path
19 </command> 22 </command>
20 <inputs> 23 <inputs>
21 <param name="spectraFile" type="data" format="msp" label="Spectra file (.MSP)" help="E.g. file produced by MsClust"/> 24 <param name="spectraFile" type="data" format="msp" label="Spectra file (.MSP)" help="E.g. file produced by MsClust"/>
22 25
23 <param name="hitsToReport" type="integer" size="10" value="3" label="Number of matches to report per spetrum" 26 <param name="hitsToReport" type="integer" size="10" value="3" label="Number of matches to report per spetrum"
826 829
827 </configfiles> 830 </configfiles>
828 831
829 <outputs> 832 <outputs>
830 <data name="outputFile" format="tabular" label="${tool.name} on ${on_string} - NIST library matches (TSV)"/> 833 <data name="outputFile" format="tabular" label="${tool.name} on ${on_string} - NIST library matches (TSV)"/>
834 <data name="outputFileFinal" format="tabular" label="${tool.name} on ${on_string} - NIST library matches (TSV)"/>
831 <data name="outputLog" format="txt" label="${tool.name} on ${on_string} - LOG" hidden="True"/> 835 <data name="outputLog" format="txt" label="${tool.name} on ${on_string} - LOG" hidden="True"/>
832 <data name="htmlReportFile" format="html" label="${tool.name} on ${on_string} - NIST matches report (HTML)"/> 836 <data name="htmlReportFile" format="html" label="${tool.name} on ${on_string} - NIST matches report (HTML)"/>
833 </outputs> 837 </outputs>
834 <tests> 838 <tests>
835 <test> 839 <test>