Mercurial > repos > pieterlukasse > primo_multiomics
comparison ontologyvis.xml @ 13:a4c4656ad9e0
some improvements/fixes?
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Sat, 28 Mar 2015 21:21:32 +0100 |
| parents | 65850557aae9 |
| children |
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| 12:fb265c83b884 | 13:a4c4656ad9e0 |
|---|---|
| 67 label="Display individual observation items" | 67 label="Display individual observation items" |
| 68 help="Whether to render the individual observation items in the visualization. Disable this if you expect many (thousands) of | 68 help="Whether to render the individual observation items in the visualization. Disable this if you expect many (thousands) of |
| 69 individual observation items per ontology entry."/> | 69 individual observation items per ontology entry."/> |
| 70 | 70 |
| 71 <param name="oneTermOnlyAnnotation" type="boolean" checked="true" | 71 <param name="oneTermOnlyAnnotation" type="boolean" checked="true" |
| 72 label="Use only one annotation per observation items" | 72 label="Try to use only one term per observation items" |
| 73 help="Check this to force each observation item to keep only one of its ontology annotations, | 73 help="If checked, the algorithm will try to reduce the number of terms to which an |
| 74 as a form of redundancy reduction. If checked, the algorithm will | 74 observation item is associated. The observation item can still appear in more than one |
| 75 keep the ontology annotation that has most other (sibling) observation items."/> | 75 term circle, but the algorithm will try to reduce this by preferring the bigger circles."/> |
| 76 | 76 |
| 77 <param name="allowMultipleSuperClasses" type="boolean" checked="false" | 77 <param name="allowMultipleSuperClasses" type="boolean" checked="false" |
| 78 label="Allow ontology terms to be nested under more than one super class" | 78 label="Allow ontology terms to be nested under more than one super class" |
| 79 help="Some ontology classes have multiple super classes. Check this to allow | 79 help="Some ontology classes can have multiple super classes. Check this to allow |
| 80 nesting the classes under each of its super classes. Not checking this option | 80 nesting the classes under each of its super classes. Even when NOT checking this option, |
| 81 will cause the ontology classes that have more than one super class to | 81 the ontology classes can still appear in more than one |
| 82 be nested under the super class that has (initially) most observation items | 82 term circle/superclass, but the algorithm will try to reduce this by preferring the bigger circles."/> |
| 83 under it (directly or in its sub classes)."/> | |
| 84 | 83 |
| 85 </inputs> | 84 </inputs> |
| 86 <outputs> | 85 <outputs> |
| 87 <data name="htmlReportFile" format="html" label="${tool.name} on ${on_string}: ontology observations report (HTML)"></data> | 86 <data name="htmlReportFile" format="html" label="${tool.name} on ${on_string}: ontology observations report (HTML)"></data> |
| 88 </outputs> | 87 </outputs> |