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1 PRIMS-masscomb toolset & Galaxy wrappers
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2 ========================================
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3
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4 MASSCOMB module of Plant Research International's Mass Spectrometry (PRIMS) toolsuite.
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5
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6 This toolset consists of tools that enable combining popular external mass spectrometry
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7 data processing tools (like X!Tandem and ProteoWizard's MsPicture)
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8 into your own Galaxy workflows.
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9
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10 Can be used a.o. in combination with PRIMV-visualization (primv_visualization package) and
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11 PRIMS-proteomics (prims_proteomics package).
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12
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13 Copyright 2010-2013 by Pieter Lukasse, Plant Research International (PRI),
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14 Wageningen, The Netherlands. All rights reserved. See the license text in LICENSE file.
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15
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16 Galaxy wrappers and installation are available from the Galaxy Tool Shed at:
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17 http://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_masscomb
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18
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19
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20 History
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21 =======
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22
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23 ============== ========================================================================
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24 Date Changes
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25 -------------- ------------------------------------------------------------------------
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26 January 2014 * first release via Tool Shed
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27 November 2013 * tools used internally at PRI
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28 ... ...
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29 December 2011 * added wrapper for X!Tandem and tool for converting output to MzIdentML
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30 ============== ========================================================================
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31
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32 Tool Versioning
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33 ===============
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34
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35 Tools will have versions of the form X.Y.Z. Versions
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36 differing only after the second decimal should be completely
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37 compatible with each other. Breaking changes should result in an
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38 increment of the number before and/or after the first decimal. All
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39 tools of version less than 1.0.0 should be considered beta.
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40
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41
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42 Bug Reports & other questions
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43 =============================
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44
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45 For the time being issues can be reported via the contact form at
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46 http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm
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47
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48 Developers, Contributions & Collaborations
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49 ==========================================
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50
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51 If you wish to join forces and collaborate on some of the
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52 tools do not hesitate to contact Pieter Lukasse via the contact form above.
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53
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54 License (Apache, Version 2.0)
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55 =============================
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56
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57 Copyright 2013 Pieter Lukasse, Plant Research International (PRI).
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58
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59 Licensed under the Apache License, Version 2.0 (the "License");
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60 you may not use this software except in compliance with the License.
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61 You may obtain a copy of the License at
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62
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63 http://www.apache.org/licenses/LICENSE-2.0
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64
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65 Unless required by applicable law or agreed to in writing, software
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66 distributed under the License is distributed on an "AS IS" BASIS,
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67 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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68 See the License for the specific language governing permissions and
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69 limitations under the License.
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