Mercurial > repos > pieterlukasse > prims_masscomb

annotate tool_dependencies.xml @ 9:c317e0f939df

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Made converter more robust and added support for mzXML in xtandem interface
author pieter.lukasse@wur.nl
date Fri, 07 Feb 2014 11:41:58 +0100
parents d6001e8d7441
children 1a6fa343b981
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <!-- see also http://wiki.galaxyproject.org/ToolShedToolFeatures for syntax help -->
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4 <package name="xtandem" version="12.10011">
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5 <install version="1.0">
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6 <actions>
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7 <action type="download_by_url">ftp://ftp.thegpm.org/projects/tandem/source/2011-12-01/tandem-linux-12-10-01-1.zip</action>
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8 <!--<action type="shell_command">make clean</action>
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9 <action type="shell_command">make</action>-->
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10 <action type="move_directory_files">
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11 <source_directory>../tandem-linux-12-10-01-1</source_directory>
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12 <destination_directory>$INSTALL_DIR/tandem-linux-12-10-01-1</destination_directory>
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13 </action>
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14 <action type="shell_command">chmod 755 $INSTALL_DIR/tandem-linux-12-10-01-1/bin/tandem.exe</action>
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15 <!--<action type="chmod"><file mode="755">$INSTALL_DIR/tandem-linux-12-10-01-1/bin/tandem.exe</file><action>-->
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16 <action type="set_environment">
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17 <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable>
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18 </action>
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19 </actions>
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20 </install>
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21 <readme>
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22 Ensures XTandem is installed.
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23 </readme>
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24 </package>
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25 <set_environment version="1.0">
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26 <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable>
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27 </set_environment>
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28 </tool_dependency>