Mercurial > repos > pieterlukasse > prims_masscomb
annotate README.rst @ 13:c91d0d09cb0c default tip
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| author | pieter.lukasse@wur.nl |
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| date | Wed, 18 Feb 2015 14:24:50 +0100 |
| parents | f47b24cccf88 |
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| rev | line source |
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| 0 | 1 PRIMS-masscomb toolset & Galaxy wrappers |
| 2 ======================================== | |
| 3 | |
| 4 MASSCOMB module of Plant Research International's Mass Spectrometry (PRIMS) toolsuite. | |
| 5 | |
| 6 This toolset consists of tools that enable combining popular external mass spectrometry | |
| 7 data processing tools (like X!Tandem and ProteoWizard's MsPicture) | |
| 8 into your own Galaxy workflows. | |
| 9 | |
| 10 Can be used a.o. in combination with PRIMV-visualization (primv_visualization package) and | |
| 11 PRIMS-proteomics (prims_proteomics package). | |
| 12 | |
| 13 Copyright 2010-2013 by Pieter Lukasse, Plant Research International (PRI), | |
| 14 Wageningen, The Netherlands. All rights reserved. See the license text in LICENSE file. | |
| 15 | |
| 16 Galaxy wrappers and installation are available from the Galaxy Tool Shed at: | |
| 17 http://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_masscomb | |
| 18 | |
| 19 | |
| 20 History | |
| 21 ======= | |
| 22 | |
| 23 ============== ======================================================================== | |
| 24 Date Changes | |
| 25 -------------- ------------------------------------------------------------------------ | |
| 26 January 2014 * first release via Tool Shed | |
| 27 November 2013 * tools used internally at PRI | |
| 28 ... ... | |
| 29 December 2011 * added wrapper for X!Tandem and tool for converting output to MzIdentML | |
| 30 ============== ======================================================================== | |
| 31 | |
| 32 Tool Versioning | |
| 33 =============== | |
| 34 | |
| 35 Tools will have versions of the form X.Y.Z. Versions | |
| 36 differing only after the second decimal should be completely | |
| 37 compatible with each other. Breaking changes should result in an | |
| 38 increment of the number before and/or after the first decimal. All | |
| 39 tools of version less than 1.0.0 should be considered beta. | |
| 40 | |
| 41 | |
| 42 Bug Reports & other questions | |
| 43 ============================= | |
| 44 | |
| 45 For the time being issues can be reported via the contact form at | |
| 46 http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm | |
| 47 | |
| 48 Developers, Contributions & Collaborations | |
| 49 ========================================== | |
| 50 | |
| 51 If you wish to join forces and collaborate on some of the | |
| 52 tools do not hesitate to contact Pieter Lukasse via the contact form above. | |
| 53 | |
| 54 License (Apache, Version 2.0) | |
| 55 ============================= | |
| 56 | |
| 57 Copyright 2013 Pieter Lukasse, Plant Research International (PRI). | |
| 58 | |
| 59 Licensed under the Apache License, Version 2.0 (the "License"); | |
| 60 you may not use this software except in compliance with the License. | |
| 61 You may obtain a copy of the License at | |
| 62 | |
| 63 http://www.apache.org/licenses/LICENSE-2.0 | |
| 64 | |
| 65 Unless required by applicable law or agreed to in writing, software | |
| 66 distributed under the License is distributed on an "AS IS" BASIS, | |
| 67 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| 68 See the License for the specific language governing permissions and | |
| 69 limitations under the License. | |
|
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70 |
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71 License of third party software used |
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f47b24cccf88
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72 ==================================== |
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f47b24cccf88
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73 For X!Tandem see the license included in this repository: |
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f47b24cccf88
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74 http://toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_masscomb/file/tip/XTANDEM_README.txt |
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f47b24cccf88
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75 |
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f47b24cccf88
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76 For ProteoWizard see the license included in this repository: |
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f47b24cccf88
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77 http://toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_masscomb/file/tip/PROTEOWIZARD_LICENSE.txt |