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comparison masscomb_dbsearch_xtandem.xml @ 8:153e9eb5f2ff

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new option in file splitter; small fix in xtandem form
author pieter.lukasse@wur.nl
date Fri, 31 Jan 2014 12:06:57 +0100
parents b34fb7461546
children c317e0f939df
comparison
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7:33899d82fbc1 8:153e9eb5f2ff
195 </param> 195 </param>
196 <param name="refine_max_valid_expect" type="text" size="30" label="maximum valid expectation value for identifications coming from refine step" value="0.01" 196 <param name="refine_max_valid_expect" type="text" size="30" label="maximum valid expectation value for identifications coming from refine step" value="0.01"
197 help="Max E-Value of a 'refine based' hit to be reported. Notice that the default value here is stricter than 197 help="Max E-Value of a 'refine based' hit to be reported. Notice that the default value here is stricter than
198 the same parameter for 'non-refine based' identifications above. "/> 198 the same parameter for 'non-refine based' identifications above. "/>
199 </when> 199 </when>
200
201 <when value="no">
202 </when>
200 </conditional> 203 </conditional>
201 <param name="reverse_scoring" type="select" label="Scoring, include reverse" help=" Use the X! Tandem protein sequence reverse method (sequences are reversed in memory and searched again, the tag ':reversed' is added to the protein description)."> 204 <param name="reverse_scoring" type="select" label="Scoring, include reverse" help=" Use the X! Tandem protein sequence reverse method (sequences are reversed in memory and searched again, the tag ':reversed' is added to the protein description).">
202 <option value="yes">Yes</option> 205 <option value="yes">Yes</option>
203 <option value="no" selected="true">No</option> 206 <option value="no" selected="true">No</option>
204 <option value="only">Only</option> 207 <option value="only">Only</option>