Mercurial > repos > pieterlukasse > prims_masscomb

comparison masscomb_file_splitter.xml @ 8:153e9eb5f2ff

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
new option in file splitter; small fix in xtandem form
author pieter.lukasse@wur.nl
date Fri, 31 Jan 2014 12:06:57 +0100
parents 33899d82fbc1
children
comparison
equal deleted inserted replaced
7:33899d82fbc1 8:153e9eb5f2ff
16 <inputs> 16 <inputs>
17 <param name="inputFile" type="data" format="" label="Input file to split"/> 17 <param name="inputFile" type="data" format="" label="Input file to split"/>
18 18
19 <param name="splitExpression" type="select" label="(regular)Expression to split on" help=""> 19 <param name="splitExpression" type="select" label="(regular)Expression to split on" help="">
20 <option value="^>.+">line start with &gt;alphanumeric (^&gt;.+)</option> 20 <option value="^>.+">line start with &gt;alphanumeric (^&gt;.+)</option>
21 <option value=".*&lt;peak_listSLASHW+.*">APML peak_list tag (.*&lt;peak_list\W+.*)</option>
21 </param> 22 </param>
22 <param name="nameExpression" type="select" label="(regular)Expression for file name" help=""> 23 <param name="nameExpression" type="select" label="(regular)Expression for file name" help="">
23 <option value="SLASHw+">alphanumeric part (\w)</option> 24 <option value="SLASHw+">alphanumeric part (\w)</option>
25 <option value="SLASHw+SLASH.raw">APML peak_list raw source file name (\w+\.raw)</option>
24 </param> 26 </param>
25 27
26 <param name="extension" type="text" size="30" label="File extension for the 'sub-files'" value=".txt" help=""/> 28 <param name="extension" type="text" size="30" label="File extension for the 'sub-files'" value=".txt" help=""/>
27 29
28 </inputs> 30 </inputs>
32 <tests> 34 <tests>
33 <test> 35 <test>
34 </test> 36 </test>
35 </tests> 37 </tests>
36 <help> 38 <help>
37 39 This tool splits files of mainly custom formats. The lists of "Expression to split on" and
40 "Expression for file name" are populated based on feedback from users. Users don't need
41 to learn the regular expressions but can select options based on descriptions.
42 A free input text box for the expressions is not supported for a number of reasons,
43 one of them being the performance impact small errors could have.
44 <!-- furthermore galaxy is not escaping all special characters correctly, so
45 having a text input box where advanced users can type in their expressions is
46 not supported. -->
38 </help> 47 </help>
39 </tool> 48 </tool>