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author pieter.lukasse@wur.nl
date Wed, 08 Jan 2014 11:34:51 +0100
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1 PRIMS-masscomb toolset & Galaxy wrappers
2 ========================================
3
4 MASSCOMB module of Plant Research International's Mass Spectrometry (PRIMS) toolsuite.
5
6 This toolset consists of tools that enable combining popular external mass spectrometry
7 data processing tools (like X!Tandem and ProteoWizard's MsPicture)
8 into your own Galaxy workflows.
9
10 Can be used a.o. in combination with PRIMV-visualization (primv_visualization package) and
11 PRIMS-proteomics (prims_proteomics package).
12
13 Copyright 2010-2013 by Pieter Lukasse, Plant Research International (PRI),
14 Wageningen, The Netherlands. All rights reserved. See the license text in LICENSE file.
15
16 Galaxy wrappers and installation are available from the Galaxy Tool Shed at:
17 http://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_masscomb
18
19
20 History
21 =======
22
23 ============== ========================================================================
24 Date Changes
25 -------------- ------------------------------------------------------------------------
26 January 2014 * first release via Tool Shed
27 November 2013 * tools used internally at PRI
28 ... ...
29 December 2011 * added wrapper for X!Tandem and tool for converting output to MzIdentML
30 ============== ========================================================================
31
32 Tool Versioning
33 ===============
34
35 Tools will have versions of the form X.Y.Z. Versions
36 differing only after the second decimal should be completely
37 compatible with each other. Breaking changes should result in an
38 increment of the number before and/or after the first decimal. All
39 tools of version less than 1.0.0 should be considered beta.
40
41
42 Bug Reports & other questions
43 =============================
44
45 For the time being issues can be reported via the contact form at
46 http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm
47
48 Developers, Contributions & Collaborations
49 ==========================================
50
51 If you wish to join forces and collaborate on some of the
52 tools do not hesitate to contact Pieter Lukasse via the contact form above.
53
54 License (Apache, Version 2.0)
55 =============================
56
57 Copyright 2013 Pieter Lukasse, Plant Research International (PRI).
58
59 Licensed under the Apache License, Version 2.0 (the "License");
60 you may not use this software except in compliance with the License.
61 You may obtain a copy of the License at
62
63 http://www.apache.org/licenses/LICENSE-2.0
64
65 Unless required by applicable law or agreed to in writing, software
66 distributed under the License is distributed on an "AS IS" BASIS,
67 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
68 See the License for the specific language governing permissions and
69 limitations under the License.
70