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comparison tool_dependencies.xml @ 0:d6001e8d7441

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author pieter.lukasse@wur.nl
date Wed, 08 Jan 2014 11:34:51 +0100
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children 1a6fa343b981
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-1:000000000000 0:d6001e8d7441
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <!-- see also http://wiki.galaxyproject.org/ToolShedToolFeatures for syntax help -->
4 <package name="xtandem" version="12.10011">
5 <install version="1.0">
6 <actions>
7 <action type="download_by_url">ftp://ftp.thegpm.org/projects/tandem/source/2011-12-01/tandem-linux-12-10-01-1.zip</action>
8 <!--<action type="shell_command">make clean</action>
9 <action type="shell_command">make</action>-->
10 <action type="move_directory_files">
11 <source_directory>../tandem-linux-12-10-01-1</source_directory>
12 <destination_directory>$INSTALL_DIR/tandem-linux-12-10-01-1</destination_directory>
13 </action>
14 <action type="shell_command">chmod 755 $INSTALL_DIR/tandem-linux-12-10-01-1/bin/tandem.exe</action>
15 <!--<action type="chmod"><file mode="755">$INSTALL_DIR/tandem-linux-12-10-01-1/bin/tandem.exe</file><action>-->
16 <action type="set_environment">
17 <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable>
18 </action>
19 </actions>
20 </install>
21 <readme>
22 Ensures XTandem is installed.
23 </readme>
24 </package>
25 <set_environment version="1.0">
26 <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable>
27 </set_environment>
28 </tool_dependency>