Mercurial > repos > pieterlukasse > prims_masscomb

comparison masscomb_dbsearch_converter.xml @ 12:e38e97bc902d

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
added comment
author pieter.lukasse@wur.nl
date Fri, 23 Jan 2015 15:45:50 +0100
parents 1a6fa343b981
children
comparison
equal deleted inserted replaced
11:1a6fa343b981 12:e38e97bc902d
43 </when> 43 </when>
44 <when value="omssa"> 44 <when value="omssa">
45 <param name="inputFile" type="data" format="omx" label="MS/MS search results"/> 45 <param name="inputFile" type="data" format="omx" label="MS/MS search results"/>
46 </when> 46 </when>
47 <when value="proteomediscoverer_pepxml"> 47 <when value="proteomediscoverer_pepxml">
48 <param name="inputFile" type="data" format="pepxml" label="MS/MS search results (pepxml)"/> 48 <param name="inputFile" type="data" format="any" label="MS/MS search results (pepxml)"/>
49 </when> 49 </when>
50 </conditional> 50 </conditional>
51 </when> 51 </when>
52 <when value="fileSet"> 52 <when value="fileSet">
53 <conditional name="inputFormatType"> 53 <conditional name="inputFormatType">
68 </conditional> 68 </conditional>
69 </when> 69 </when>
70 </conditional> 70 </conditional>
71 <param name="outputMsMsFragmentationData" type="boolean" checked="false" 71 <param name="outputMsMsFragmentationData" type="boolean" checked="false"
72 label="Output MS/MS fragmentation data" 72 label="Output MS/MS fragmentation data"
73 help="NB: this will add to the output also the fragment ions related to each peptide identification"/> 73 help="NB: this will add to the output also the fragment ions related to each peptide identification.
74 NB2: Fragment ion annotation data is
75 inferred based on new calculations triggered by this conversion tool.
76 This is done because fragment ion annotation information is not present
77 in X!Tandem file (X!Tandem SLEDGEHAMMER (2013.09.01) and previous)"/>
74 78
75 </inputs> 79 </inputs>
76 <outputs> 80 <outputs>
77 <data name="outputFile" format="mzid" label="${tool.name} (to MzIdentML) on ${on_string} "> 81 <data name="outputFile" format="mzid" label="${tool.name} (to MzIdentML) on ${on_string} ">
78 <change_format> 82 <change_format>