Mercurial > repos > pieterlukasse > prims_masscomb
diff tool_dependencies.xml @ 11:1a6fa343b981
Adding auto install for proteowizard dependency
author | pieter.lukasse@wur.nl |
---|---|
date | Fri, 07 Feb 2014 15:55:38 +0100 |
parents | d6001e8d7441 |
children | c91d0d09cb0c |
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--- a/tool_dependencies.xml Fri Feb 07 15:09:53 2014 +0100 +++ b/tool_dependencies.xml Fri Feb 07 15:55:38 2014 +0100 @@ -22,7 +22,24 @@ Ensures XTandem is installed. </readme> </package> + <package name="proteowizard" version="3.05622"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_masscomb/raw-file/tip/pwiz-bin-linux-x86_64-gcc48-release-3_0_5622.tar.bz2</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/pwiz_3_0_5622</destination_directory> + </action> + <action type="set_environment"> + <environment_variable name="PWIZ_3_0_5622_PATH" action="set_to">$INSTALL_DIR/pwiz_3_0_5622</environment_variable> + </action> + </actions> + </install> + <readme> +Ensures ProteoWizard binaries are installed. + </readme> + </package> <set_environment version="1.0"> - <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable> + <environment_variable name="PWIZ_3_0_5622_PATH" action="set_to">$INSTALL_DIR/pwiz_3_0_5622</environment_variable> </set_environment> </tool_dependency> \ No newline at end of file