Mercurial > repos > pieterlukasse > prims_masscomb

changeset 12:e38e97bc902d

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
added comment
author pieter.lukasse@wur.nl
date Fri, 23 Jan 2015 15:45:50 +0100
parents 1a6fa343b981
children c91d0d09cb0c
files masscomb_dbsearch_converter.xml
diffstat 1 files changed, 6 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/masscomb_dbsearch_converter.xml	Fri Feb 07 15:55:38 2014 +0100
+++ b/masscomb_dbsearch_converter.xml	Fri Jan 23 15:45:50 2015 +0100
@@ -45,7 +45,7 @@
 	      		<param name="inputFile" type="data" format="omx" label="MS/MS search results"/>
 	      	</when>
 	      	<when value="proteomediscoverer_pepxml">
-	      		<param name="inputFile" type="data" format="pepxml" label="MS/MS search results (pepxml)"/>
+	      		<param name="inputFile" type="data" format="any" label="MS/MS search results (pepxml)"/>
 	      	</when>
 	      </conditional>
 	    </when>
@@ -70,7 +70,11 @@
 	  </conditional>
 	  <param name="outputMsMsFragmentationData" type="boolean" checked="false" 
 	  label="Output MS/MS fragmentation data" 
-	  help="NB: this will add to the output also the fragment ions related to each peptide identification"/>
+	  help="NB: this will add to the output also the fragment ions related to each peptide identification. 
+	  NB2: Fragment ion annotation data is 
+		inferred based on new calculations triggered by this conversion tool. 
+		This is done because fragment ion annotation information is not present 
+		in X!Tandem file (X!Tandem SLEDGEHAMMER (2013.09.01) and previous)"/>
      	
 	</inputs>
 	<outputs>