0
+ − 1 '''
+ − 2 Created on Mar 6, 2012
+ − 3
+ − 4 @author: marcelk
+ − 5 '''
+ − 6 from GCMS import match_library
+ − 7 import unittest
+ − 8 from pkg_resources import resource_filename # @UnresolvedImport # pylint: disable=E0611
+ − 9
+ − 10
+ − 11 class Test(unittest.TestCase):
+ − 12 '''
+ − 13 Tests the 'match_library' Galaxy tool
+ − 14 '''
+ − 15 nist_db = resource_filename(__name__, "data/RIDB_subset.txt")
+ − 16
+ − 17 def test_get_column_type(self):
+ − 18 '''
+ − 19 Tests the 'get_column_type' function that returns tuples of unique elements
+ − 20 for column types in the RI database
+ − 21 '''
+ − 22 galaxy_output = match_library.get_column_type(self.nist_db)
+ − 23 self.assertEqual([('Capillary(9999)', 'Capillary', False)], galaxy_output)
+ − 24
+ − 25 def test_filter_column(self):
+ − 26 '''
+ − 27 Tests the 'filter_column' function showing the column phase for all 'Capillary' columns
+ − 28 '''
+ − 29 galaxy_output = match_library.filter_column(self.nist_db, 'Capillary')
+ − 30 self.assertEqual([('Semi-standard non-polar(9999)', 'Semi-standard non-polar', False)], galaxy_output)
+ − 31
+ − 32 def test_filter_column2(self):
+ − 33 '''
+ − 34 Tests the 'filter_column' function showing all possibilities for columns having both the
+ − 35 'Capillary' and 'Semi-standard non-polar' properties
+ − 36 '''
+ − 37 galaxy_output = match_library.filter_column2(self.nist_db, 'Capillary', 'Semi-standard non-polar')
+ − 38 self.failUnless(('Apiezon M(6)', 'Apiezon M', False) in galaxy_output)
+ − 39
+ − 40 def test_count_occurrence(self):
+ − 41 '''
+ − 42 Tests the 'count_occurrence' function
+ − 43 '''
+ − 44 test_list = [2, 0, 0, 2, 1, 3, 4, 5, 3, 2, 3, 4, 5, 5, 4, 2, 5, 3, 4, 3, 5, 4, 2, 0, 4]
+ − 45 counts = match_library.count_occurrence(test_list)
+ − 46 self.assertEqual({0: 3, 1: 1, 2: 5, 3: 5, 4: 6, 5: 5}, counts)
+ − 47
+ − 48
+ − 49 if __name__ == "__main__":
+ − 50 #import sys;sys.argv = ['', 'Test.testName']
+ − 51 unittest.main()
