|
0
|
1 '''
|
|
|
2 Created on Mar 6, 2012
|
|
|
3
|
|
|
4 @author: marcelk
|
|
|
5 '''
|
|
|
6 from GCMS import match_library
|
|
|
7 import unittest
|
|
|
8 from pkg_resources import resource_filename # @UnresolvedImport # pylint: disable=E0611
|
|
|
9
|
|
|
10
|
|
|
11 class Test(unittest.TestCase):
|
|
|
12 '''
|
|
|
13 Tests the 'match_library' Galaxy tool
|
|
|
14 '''
|
|
|
15 nist_db = resource_filename(__name__, "data/RIDB_subset.txt")
|
|
|
16
|
|
|
17 def test_get_column_type(self):
|
|
|
18 '''
|
|
|
19 Tests the 'get_column_type' function that returns tuples of unique elements
|
|
|
20 for column types in the RI database
|
|
|
21 '''
|
|
|
22 galaxy_output = match_library.get_column_type(self.nist_db)
|
|
|
23 self.assertEqual([('Capillary(9999)', 'Capillary', False)], galaxy_output)
|
|
|
24
|
|
|
25 def test_filter_column(self):
|
|
|
26 '''
|
|
|
27 Tests the 'filter_column' function showing the column phase for all 'Capillary' columns
|
|
|
28 '''
|
|
|
29 galaxy_output = match_library.filter_column(self.nist_db, 'Capillary')
|
|
|
30 self.assertEqual([('Semi-standard non-polar(9999)', 'Semi-standard non-polar', False)], galaxy_output)
|
|
|
31
|
|
|
32 def test_filter_column2(self):
|
|
|
33 '''
|
|
|
34 Tests the 'filter_column' function showing all possibilities for columns having both the
|
|
|
35 'Capillary' and 'Semi-standard non-polar' properties
|
|
|
36 '''
|
|
|
37 galaxy_output = match_library.filter_column2(self.nist_db, 'Capillary', 'Semi-standard non-polar')
|
|
|
38 self.failUnless(('Apiezon M(6)', 'Apiezon M', False) in galaxy_output)
|
|
|
39
|
|
|
40 def test_count_occurrence(self):
|
|
|
41 '''
|
|
|
42 Tests the 'count_occurrence' function
|
|
|
43 '''
|
|
|
44 test_list = [2, 0, 0, 2, 1, 3, 4, 5, 3, 2, 3, 4, 5, 5, 4, 2, 5, 3, 4, 3, 5, 4, 2, 0, 4]
|
|
|
45 counts = match_library.count_occurrence(test_list)
|
|
|
46 self.assertEqual({0: 3, 1: 1, 2: 5, 3: 5, 4: 6, 5: 5}, counts)
|
|
|
47
|
|
|
48
|
|
|
49 if __name__ == "__main__":
|
|
|
50 #import sys;sys.argv = ['', 'Test.testName']
|
|
|
51 unittest.main()
|
