Mercurial > repos > pieterlukasse > prims_metabolomics

comparison rankfilterGCMS_tabular.xml @ 20:24fb75fedee0

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Made calibration file configurable at UI.
author pieter.lukasse@wur.nl
date Tue, 11 Feb 2014 12:29:50 +0100
parents 9d5f4f5f764b
children 19d8fd10248e
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19:c068ed713eb9 20:24fb75fedee0
3 <command interpreter="python">rankfilter_GCMS/rankfilter.py $input_file</command> 3 <command interpreter="python">rankfilter_GCMS/rankfilter.py $input_file</command>
4 <inputs> 4 <inputs>
5 <param format="tabular" name="sample" type="data" label="Sample File" 5 <param format="tabular" name="sample" type="data" label="Sample File"
6 help="Converted PDF file in tabular format" /> 6 help="Converted PDF file in tabular format" />
7 <!-- question: is this calibration file not column specific as it includes RT info?? --> 7 <!-- question: is this calibration file not column specific as it includes RT info?? -->
8 <param name="calibration" type="select" label="Calibration File" 8 <!-- this one should be input file for now:<param name="calibration" type="select" label="Calibration File"
9 help="Calibration file with reference masses (e.g. alkanes) with their RT and RI values" 9 help="Calibration file with reference masses (e.g. alkanes) with their RT and RI values"
10 dynamic_options='get_directory_files("tool-data/shared/PRIMS-metabolomics/RankFilter_Calibration_Files")'/> 10 dynamic_options='get_directory_files("tool-data/shared/PRIMS-metabolomics/RankFilter_Calibration_Files")'/>
11 -->
12 <param name="calibration" format="any" type="data" label="Calibration File"
13 help="Calibration file containing reference masses (e.g. alkanes) with their respective RT and RI values"/>
11 14
12 <param name="analysis_type" type="select" format="text" label="Analysis Type" 15 <param name="analysis_type" type="select" format="text" label="Analysis Type"
13 help="Select the type of analysis that has been used to generate the sample file"> 16 help="Select the type of analysis that has been used to generate the sample file">
14 <option value="NIST">NIST</option> 17 <option value="NIST">NIST</option>
15 <option value="AMDIS">AMDIS</option> 18 <option value="AMDIS">AMDIS</option>