Mercurial > repos > pieterlukasse > prims_metabolomics

comparison test/test_library_lookup.py @ 30:60b53f2aa48a

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Small fixes, added microminutes support to MsClust, removed TIC or MsClust output
author pieter.lukasse@wur.nl
date Sat, 30 Aug 2014 16:14:18 +0200
parents 53e1eee93430
children eb0e25d06060
comparison
equal deleted inserted replaced
29:0d534bce8e84 30:60b53f2aa48a
147 ''' 147 '''
148 Tests the match_library.py functionality 148 Tests the match_library.py functionality
149 ''' 149 '''
150 riqc_libs_dir = resource_filename(__name__, "../repositories/PRIMS-metabolomics/RI_DB_libraries") 150 riqc_libs_dir = resource_filename(__name__, "../repositories/PRIMS-metabolomics/RI_DB_libraries")
151 get_library_files_output = match_library.get_directory_files(riqc_libs_dir) 151 get_library_files_output = match_library.get_directory_files(riqc_libs_dir)
152 self.assertEqual(1, len(get_library_files_output)) 152 self.assertEqual(2, len(get_library_files_output))
153 self.assertEqual("Library_RI_DB_capillary_columns-noDuplicates", get_library_files_output[0][0]) 153 self.assertEqual("Library_RI_DB_capillary_columns-noDuplicates", get_library_files_output[0][0])
154 #TODO change assert below to assert that the result is a file, so the test can run on other dirs as well: 154 #TODO change assert below to assert that the result is a file, so the test can run on other dirs as well:
155 #self.assertEqual("E:\\workspace\\PRIMS-metabolomics\\python-tools\\tools\\GCMS\\test\\data\\riqc_libs\\RI DB library (capillary columns) Dec.2012.txt", get_library_files_output[0][1]) 155 #self.assertEqual("E:\\workspace\\PRIMS-metabolomics\\python-tools\\tools\\GCMS\\test\\data\\riqc_libs\\RI DB library (capillary columns) Dec.2012.txt", get_library_files_output[0][1])
156 #self.assertEqual("RI DB library (capillary columns) Jan.2013", get_library_files_output[1][0]) 156 #self.assertEqual("RI DB library (capillary columns) Jan.2013", get_library_files_output[1][0])
157 try: 157 try: