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author pieter.lukasse@wur.nl
date Thu, 16 Jan 2014 13:10:00 +0100
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1 PRIMS-metabolomics toolset & Galaxy wrappers
2 ============================================
3
4 Metabolomics module of Plant Research International's Mass Spectrometry (PRIMS) toolsuite.
5 This toolset consists of custom tools to enable metabolite identifications and
6 Retention Index (RI) based Quality Control (RIQC) for Mass Spectrometry metabolomics data.
7
8 Copyright:
9 * 2012: NIST_UTIL and RIQC tools: Copyright (c) 2012 Maarten Kooyman and Marcel Kempenaar, NBIC BRS
10 * 2013: all tools: Copyright (c) 2013 by Pieter Lukasse, Plant Research International (PRI),
11 Wageningen, The Netherlands. All rights reserved. See the license text below.
12
13 Galaxy wrappers and installation are available from the Galaxy Tool Shed at:
14 http://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_metabolomics
15
16 History
17 =======
18
19 ============== ======================================================================
20 Date Changes
21 -------------- ----------------------------------------------------------------------
22 January 2014 * first release via Tool Shed, combining the RIQC and MsClust in a
23 single package (this package)
24 * integration with METEXP software (data store for metabolomics
25 experiments with respective metadata and identifications)
26 2013 * hand-over of the NIST_UTIL and RIQC tools from the NBIC team to
27 Plant Research International
28 2012 * development of MsClust 2.0, making it also suitable for Galaxy
29 <2011 * development and publication of MsClust 1.0
30 ============== ======================================================================
31
32 Tool Versioning
33 ===============
34
35 PRIMS tools will have versions of the form X.Y.Z. Versions
36 differing only after the second decimal should be completely
37 compatible with each other. Breaking changes should result in an
38 increment of the number before and/or after the first decimal. All
39 tools of version less than 1.0.0 should be considered beta.
40
41
42 Bug Reports & other questions
43 =============================
44
45 For the time being issues can be reported via the contact form at:
46 http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm
47
48 Developers, Contributions & Collaborations
49 ==========================================
50
51 If you wish to join forces and collaborate on some of the
52 tools do not hesitate to contact Pieter Lukasse via the contact form above.
53
54
55 License (Apache, Version 2.0)
56 =============================
57
58 Copyright 2013 Pieter Lukasse, Plant Research International (PRI).
59
60 Licensed under the Apache License, Version 2.0 (the "License");
61 you may not use this software except in compliance with the License.
62 You may obtain a copy of the License at
63
64 http://www.apache.org/licenses/LICENSE-2.0
65
66 Unless required by applicable law or agreed to in writing, software
67 distributed under the License is distributed on an "AS IS" BASIS,
68 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
69 See the License for the specific language governing permissions and
70 limitations under the License.
71