Mercurial > repos > pieterlukasse > prims_metabolomics
comparison combine_output.xml @ 41:e67149fbff20
small changes/improvements;
new metams and xcms tools
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Thu, 06 Nov 2014 16:14:44 +0100 |
| parents | 9d5f4f5f764b |
| children |
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| 40:a7b609941846 | 41:e67149fbff20 |
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| 2 <description>Perform a combination of output data from the RankFilter and CasLookup tools</description> | 2 <description>Perform a combination of output data from the RankFilter and CasLookup tools</description> |
| 3 <command interpreter="python"> | 3 <command interpreter="python"> |
| 4 combine_output.py $rankfilter_in $caslookup_in $out_single $out_multi | 4 combine_output.py $rankfilter_in $caslookup_in $out_single $out_multi |
| 5 </command> | 5 </command> |
| 6 <inputs> | 6 <inputs> |
| 7 <param format="tabular" name="caslookup_in" type="data" label="RIQC-Lookup RI for CAS output" | 7 <param format="tabular" name="rankfilter_in" type="data" label="RIQC-RankFilter output (Estimated RI)" |
| 8 help="Select the output file from the RankFilter tool"/> | |
| 9 <param format="tabular" name="caslookup_in" type="data" label="RIQC-Lookup RI for CAS output ('Known' RI)" | |
| 8 help="Select the output file from the CasLookup tool"/> | 10 help="Select the output file from the CasLookup tool"/> |
| 9 <param format="tabular" name="rankfilter_in" type="data" label="RIQC-RankFilter output" | 11 <!-- <param TODO : could add "tolerance for ERI-KRI"(Estimated RI-Known RI)--> |
| 10 help="Select the output file from the RankFilter tool"/> | |
| 11 </inputs> | 12 </inputs> |
| 12 <outputs> | 13 <outputs> |
| 13 <data format="tabular" label="${tool.name} (Single) on ${on_string}" name="out_single" /> | 14 <data format="tabular" label="${tool.name} (Single) on ${on_string}" name="out_single" /> |
| 14 <data format="tabular" label="${tool.name} (Multi) on ${on_string}" name="out_multi" /> | 15 <data format="tabular" label="${tool.name} (Multi) on ${on_string}" name="out_multi" /> |
| 15 </outputs> | 16 </outputs> |