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comparison export_to_metexp_tabular.xml @ 27:ecd3f6c9e606

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small fix to support spaces in parameters
author pieter.lukasse@wur.nl
date Thu, 01 May 2014 11:19:52 +0200
parents 637830ac8bcd
children 8ae133f554a4
comparison
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26:637830ac8bcd 27:ecd3f6c9e606
1 <tool id="export_to_metexp_tabular" 1 <tool id="export_to_metexp_tabular"
2 name="METEXP - Tabular file" 2 name="METEXP - Tabular file"
3 version="0.2.0"> 3 version="0.2.0">
4 <description>Create tabular file for loading into METabolomics EXPlorer database</description> 4 <description>Create tabular file for loading into METabolomics EXPlorer database</description>
5 <command interpreter="python"> 5 <command interpreter="python">
6 export_to_metexp_tabular.py $rankfilter_and_caslookup_combi $msclust_quant_file $output_result 6 export_to_metexp_tabular.py
7 $organism $tissue $experiment_name $user_name $column_type 7 $rankfilter_and_caslookup_combi
8 $msclust_quant_file
9 $output_result
10 "$organism"
11 "$tissue"
12 "$experiment_name"
13 "$user_name"
14 "$column_type"
8 </command> 15 </command>
9 <inputs> 16 <inputs>
10 <param format="tabular" name="rankfilter_and_caslookup_combi" type="data" label="RIQC-Combine RankFilter and CasLookup output" 17 <param format="tabular" name="rankfilter_and_caslookup_combi" type="data" label="RIQC-Combine RankFilter and CasLookup output"
11 help="Select the (multi) output file from the 'Combine RankFilter and CasLookup' tool"/> 18 help="Select the (multi) output file from the 'Combine RankFilter and CasLookup' tool"/>
12 <param format="tabular" name="msclust_quant_file" type="data" label="MusClust-quantification file output" 19 <param format="tabular" name="msclust_quant_file" type="data" label="MusClust-quantification file output"