Mercurial > repos > pieterlukasse > prims_metabolomics
diff query_metexp.xml @ 30:60b53f2aa48a
Small fixes, added microminutes support to MsClust, removed TIC or MsClust output
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Sat, 30 Aug 2014 16:14:18 +0200 |
| parents | ab7f9ec70ffc |
| children |
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--- a/query_metexp.xml Fri May 09 17:11:11 2014 +0200 +++ b/query_metexp.xml Sat Aug 30 16:14:18 2014 +0200 @@ -1,7 +1,7 @@ <tool id="query_metexp" name="METEXP - Query Database " version="0.1.0"> - <description>Query a set of identifications against the METabolomics EXPlorer database</description> + <description>Query a set of identifications against the METabolomics EXPeriments database</description> <command interpreter="python"> query_metexp.py $input_file @@ -18,6 +18,12 @@ label="Input file" help="Select a tabular file containing the entries to be queried/verified in the MetExp DB"/> + <param name="separation_method" type="select" label="Data type to query"> + <option value="GC" selected="True">GC</option> + <option value="LC">LC</option> + </param> + + <param name="casid_col" type="text" size="50" label="CAS ID column name" value="CAS" @@ -35,11 +41,7 @@ help="Select the MetExp Database/backend which should be queried" dynamic_options='get_directory_files("tool-data/shared/PRIMS-metabolomics/MetExp_Databases")'/> - <param name="separation_method" type="select" label="Data type to query"> - <option value="GC" selected="True">GC</option> - <option value="LC">LC</option> - </param> - + </inputs> <outputs> <data name="output_result" format="tabular" label="${tool.name} on ${on_string}" />