Mercurial > repos > pieterlukasse > prims_metabolomics
diff export_to_metexp_tabular.xml @ 26:637830ac8bcd
added validation in metexp to tabular tool; added workaround/fix for L and D compound types
author | pieter.lukasse@wur.nl |
---|---|
date | Thu, 24 Apr 2014 11:28:38 +0200 |
parents | 19d8fd10248e |
children | ecd3f6c9e606 |
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--- a/export_to_metexp_tabular.xml Fri Apr 04 10:25:19 2014 +0200 +++ b/export_to_metexp_tabular.xml Thu Apr 24 11:28:38 2014 +0200 @@ -1,6 +1,6 @@ <tool id="export_to_metexp_tabular" name="METEXP - Tabular file" - version="0.1.0"> + version="0.2.0"> <description>Create tabular file for loading into METabolomics EXPlorer database</description> <command interpreter="python"> export_to_metexp_tabular.py $rankfilter_and_caslookup_combi $msclust_quant_file $output_result @@ -15,22 +15,33 @@ <param name="organism" type="text" size="80" label="Organism(s) info" - help="Metadata information to accompany the results when stored in MetExp DB." /> + help="Metadata information to accompany the results when stored in MetExp DB." > + <validator type="empty_field" message="A value is required."></validator><!-- attribute optional="False" does not seem to work for params so validator is added --> + </param> + <param name="tissue" type="text" size="80" label="Tissue(s) info" - help="Metadata information to accompany the results when stored in MetExp DB." /> + help="Metadata information to accompany the results when stored in MetExp DB." > + <validator type="empty_field" message="A value is required."></validator> + </param> <param name="experiment_name" type="text" size="80" label="Experiment name/code" - help="Name or code to store the results under. This can help you find the results back in MetExpDB." /> + help="Name or code to store the results under. This can help you find the results back in MetExpDB." > + <validator type="empty_field" message="A value is required."></validator> + </param> <param name="user_name" type="text" size="80" label="User name" - help="User name or code to store the results under. This can help you find the results back in MetExpDB." /> + help="User name or code to store the results under. This can help you find the results back in MetExpDB." > + <validator type="empty_field" message="A value is required."></validator> + </param> <param name="column_type" type="text" size="80" label="Column type" - help="Column type to report with the results. This can help you find the results back in MetExpDB." /> + help="Column type to report with the results. This can help you find the results back in MetExpDB." > + <validator type="empty_field" message="A value is required."></validator> + </param> </inputs> <outputs>