Mercurial > repos > pieterlukasse > prims_metabolomics
diff xcms_differential_analysis.xml @ 49:f772a5caa86a
Added more options and better documentation.
Added MsClust support for parsing XCMS alignment results.
Improved output reports for XCMS wrappers.
New tools.
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Wed, 10 Dec 2014 22:03:27 +0100 |
| parents | e67149fbff20 |
| children |
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--- a/xcms_differential_analysis.xml Wed Nov 19 15:11:45 2014 +0100 +++ b/xcms_differential_analysis.xml Wed Dec 10 22:03:27 2014 +0100 @@ -1,4 +1,4 @@ -<tool id="xcms_differential_analysis" name="XCMS Differential Analsysis" version="0.0.1"> +<tool id="xcms_differential_analysis" name="XCMS Differential Analsysis" version="0.0.4"> <description> Runs xcms diffreport function for differential Analsysis</description> <requirements> <requirement type="package" version="3.1.1">R_bioc_metams</requirement> @@ -6,13 +6,13 @@ <command interpreter="Rscript"> xcms_differential_analysis.r $xsetData - $class1 - $class2 + "$class1" + "$class2" $topcount $outTable - $outLogFile $htmlReportFile $htmlReportFile.files_path + $outLogFile </command> <inputs> @@ -27,7 +27,7 @@ </inputs> <outputs> <data name="outTable" format="tabular" label="${tool.name} on ${on_string} - Top differential items (TSV)"/> - <data name="outLogFile" format="txt" label="${tool.name} on ${on_string} - differential log (LOG)"/> + <data name="outLogFile" format="txt" label="${tool.name} on ${on_string} - log (LOG)" hidden="True"/> <data name="htmlReportFile" format="html" label="${tool.name} on ${on_string} - differential report (HTML)"/> </outputs> <tests>