# HG changeset patch
# User pieter.lukasse@wur.nl
# Date 1392118190 -3600
# Node ID 24fb75fedee053920481c44038a70b1d10f4cbb1
# Parent  c068ed713eb9f5b1fbc73315d26cad0f9ff757b1
Made calibration file configurable at UI.

diff -r c068ed713eb9 -r 24fb75fedee0 rankfilterGCMS_tabular.xml
--- a/rankfilterGCMS_tabular.xml	Fri Jan 31 12:21:51 2014 +0100
+++ b/rankfilterGCMS_tabular.xml	Tue Feb 11 12:29:50 2014 +0100
@@ -5,9 +5,12 @@
     <param format="tabular" name="sample" type="data" label="Sample File" 
 	       help="Converted PDF file in tabular format" />
 	<!-- question: is this calibration file not column specific as it includes RT info?? -->
-    <param name="calibration"  type="select" label="Calibration File" 
+    <!-- this one should be input file for now:<param name="calibration"  type="select" label="Calibration File" 
            help="Calibration file with reference masses (e.g. alkanes) with their RT and RI values"
     		dynamic_options='get_directory_files("tool-data/shared/PRIMS-metabolomics/RankFilter_Calibration_Files")'/>
+    		-->
+    <param name="calibration" format="any" type="data" label="Calibration File" 
+           help="Calibration file containing reference masses (e.g. alkanes) with their respective RT and RI values"/>
 
     <param name="analysis_type" type="select" format="text" label="Analysis Type"
     	   help="Select the type of analysis that has been used to generate the sample file">