Mercurial > repos > pieterlukasse > prims_metabolomics2

annotate metaMS/next.r @ 6:4393f982d18f

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
reorganized sources
author pieter.lukasse@wur.nl
date Thu, 19 Mar 2015 12:22:23 +0100
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
4393f982d18f reorganized sources
pieter.lukasse@wur.nl
parents:
diff changeset
1 # next script, useful for plotting the CAMERA groups pseudo-spectra:
4393f982d18f reorganized sources
pieter.lukasse@wur.nl
parents:
diff changeset
2 plotPsSpectrum( LC$xset,320,maxlabel=10)
4393f982d18f reorganized sources
pieter.lukasse@wur.nl
parents:
diff changeset
3 320 is group id
4393f982d18f reorganized sources
pieter.lukasse@wur.nl
parents:
diff changeset
4 plotEICs( LC$xset,35,maxlabel=5)
4393f982d18f reorganized sources
pieter.lukasse@wur.nl
parents:
diff changeset
5
4393f982d18f reorganized sources
pieter.lukasse@wur.nl
parents:
diff changeset
6
4393f982d18f reorganized sources
pieter.lukasse@wur.nl
parents:
diff changeset
7 could use this for the items identified by "annotate" step.
4393f982d18f reorganized sources
pieter.lukasse@wur.nl
parents:
diff changeset
8 could also integrate this to getEIC tool (add option to give group list instead of m/z list)...but then rt and other options
4393f982d18f reorganized sources
pieter.lukasse@wur.nl
parents:
diff changeset
9 are also not so relevant...maybe a separate tool is more clear