Mercurial > repos > pieterlukasse > prims_metabolomics2

comparison GCMS/library_lookup.py @ 22:f0c6feab06e7

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fixed import match_library
author linda.bakker@wur.nl <linda.bakker@wur.nl>
date Wed, 03 Jun 2015 11:54:12 +0200
parents f70b2c169e3a
children
comparison
equal deleted inserted replaced
21:43902da5d00e 22:f0c6feab06e7
1 ''' 1 '''
2 Logic for searching a Retention Index database file given output from NIST 2 Logic for searching a Retention Index database file given output from NIST
3 ''' 3 '''
4 import os
5 import sys
6 import inspect
7 import re
8 import csv
9
10
11 #a not so perfect solution to import parent dir file match_library
12 currentdir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe())))
13 parentdir = os.path.dirname(currentdir)
14 sys.path.append(parentdir)
4 import match_library 15 import match_library
5 import re 16
6 import sys
7 import csv
8 17
9 __author__ = "Marcel Kempenaar" 18 __author__ = "Marcel Kempenaar"
10 __contact__ = "brs@nbic.nl" 19 __contact__ = "brs@nbic.nl"
11 __copyright__ = "Copyright, 2012, Netherlands Bioinformatics Centre" 20 __copyright__ = "Copyright, 2012, Netherlands Bioinformatics Centre"
12 __license__ = "MIT" 21 __license__ = "MIT"
301 310
302 311
303 def main(): 312 def main():
304 ''' 313 '''
305 Library Lookup main function 314 Library Lookup main function
306 ''' 315 '''
307 library_file = sys.argv[1] 316 library_file = sys.argv[1]
308 nist_tabular_filename = sys.argv[2] 317 nist_tabular_filename = sys.argv[2]
309 ctype = sys.argv[3] 318 ctype = sys.argv[3]
310 polar = sys.argv[4] 319 polar = sys.argv[4]
311 outfile = sys.argv[5] 320 outfile = sys.argv[5]