Mercurial > repos > pieterlukasse > prims_metabolomics2

comparison GCMS/library_lookup.py @ 20:f70b2c169e3a

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fixed select column option
author linda.bakker@wur.nl <linda.bakker@wur.nl>
date Fri, 01 May 2015 14:08:26 +0200
parents 4393f982d18f
children f0c6feab06e7
comparison
equal deleted inserted replaced
19:1cfe2b57d7f4 20:f70b2c169e3a
21 (data, header) = match_library.read_library(library_file) 21 (data, header) = match_library.read_library(library_file)
22 # Test for presence of required columns 22 # Test for presence of required columns
23 if ('columntype' not in header or 23 if ('columntype' not in header or
24 'columnphasetype' not in header or 24 'columnphasetype' not in header or
25 'cas' not in header): 25 'cas' not in header):
26 raise IOError('Missing columns in ', library_file) 26 raise IOError('Missing columns (create_lookup_table) in ', library_file)
27 27
28 column_type_column = header.index("columntype") 28 column_type_column = header.index("columntype")
29 statphase_column = header.index("columnphasetype") 29 statphase_column = header.index("columnphasetype")
30 cas_column = header.index("cas") 30 cas_column = header.index("cas")
31 31