Mercurial > repos > pieterlukasse > prims_metabolomics2
diff test/test_match_library.py @ 0:dffc38727496
initial commit
author | pieter.lukasse@wur.nl |
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date | Sat, 07 Feb 2015 22:02:00 +0100 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test/test_match_library.py Sat Feb 07 22:02:00 2015 +0100 @@ -0,0 +1,51 @@ +''' +Created on Mar 6, 2012 + +@author: marcelk +''' +from GCMS import match_library +import unittest +from pkg_resources import resource_filename # @UnresolvedImport # pylint: disable=E0611 + + +class Test(unittest.TestCase): + ''' + Tests the 'match_library' Galaxy tool + ''' + nist_db = resource_filename(__name__, "data/RIDB_subset.txt") + + def test_get_column_type(self): + ''' + Tests the 'get_column_type' function that returns tuples of unique elements + for column types in the RI database + ''' + galaxy_output = match_library.get_column_type(self.nist_db) + self.assertEqual([('Capillary(9999)', 'Capillary', False)], galaxy_output) + + def test_filter_column(self): + ''' + Tests the 'filter_column' function showing the column phase for all 'Capillary' columns + ''' + galaxy_output = match_library.filter_column(self.nist_db, 'Capillary') + self.assertEqual([('Semi-standard non-polar(9999)', 'Semi-standard non-polar', False)], galaxy_output) + + def test_filter_column2(self): + ''' + Tests the 'filter_column' function showing all possibilities for columns having both the + 'Capillary' and 'Semi-standard non-polar' properties + ''' + galaxy_output = match_library.filter_column2(self.nist_db, 'Capillary', 'Semi-standard non-polar') + self.failUnless(('Apiezon M(6)', 'Apiezon M', False) in galaxy_output) + + def test_count_occurrence(self): + ''' + Tests the 'count_occurrence' function + ''' + test_list = [2, 0, 0, 2, 1, 3, 4, 5, 3, 2, 3, 4, 5, 5, 4, 2, 5, 3, 4, 3, 5, 4, 2, 0, 4] + counts = match_library.count_occurrence(test_list) + self.assertEqual({0: 3, 1: 1, 2: 5, 3: 5, 4: 6, 5: 5}, counts) + + +if __name__ == "__main__": + #import sys;sys.argv = ['', 'Test.testName'] + unittest.main()