Mercurial > repos > pieterlukasse > prims_metabolomics2
changeset 22:f0c6feab06e7
fixed import match_library
| author | linda.bakker@wur.nl <linda.bakker@wur.nl> |
|---|---|
| date | Wed, 03 Jun 2015 11:54:12 +0200 |
| parents | 43902da5d00e |
| children | bee03dc123f2 |
| files | GCMS/library_lookup.py |
| diffstat | 1 files changed, 12 insertions(+), 3 deletions(-) [+] |
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--- a/GCMS/library_lookup.py Wed May 06 08:06:53 2015 +0200 +++ b/GCMS/library_lookup.py Wed Jun 03 11:54:12 2015 +0200 @@ -1,11 +1,20 @@ ''' Logic for searching a Retention Index database file given output from NIST ''' -import match_library +import os +import sys +import inspect import re -import sys import csv + +#a not so perfect solution to import parent dir file match_library +currentdir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe()))) +parentdir = os.path.dirname(currentdir) +sys.path.append(parentdir) +import match_library + + __author__ = "Marcel Kempenaar" __contact__ = "brs@nbic.nl" __copyright__ = "Copyright, 2012, Netherlands Bioinformatics Centre" @@ -303,7 +312,7 @@ def main(): ''' Library Lookup main function - ''' + ''' library_file = sys.argv[1] nist_tabular_filename = sys.argv[2] ctype = sys.argv[3]