Mercurial > repos > pieterlukasse > prims_metabolomics_r_dependencies

comparison tool_dependencies.xml @ 2:16ad47f8751f

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adding lib png and other options
author pieter.lukasse@wur.nl
date Fri, 07 Nov 2014 12:04:54 +0100
parents d57322d79cfe
children a0b2e0545d72
comparison
equal deleted inserted replaced
1:e6171a39dd04 2:16ad47f8751f
5 --> 5 -->
6 <package name="R_bioc_metams" version="3.1.1"> 6 <package name="R_bioc_metams" version="3.1.1">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions_group> 8 <actions_group>
9 <actions> 9 <actions>
10 <package name="readline" version="6.2">
11 <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
12 </package>
13 <package name="libpng" version="1.6.7">
14 <repository changeset_revision="db14a391648d" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
15 </package>
16 <package name="cairo" version="1.12.14">
17 <repository changeset_revision="b39299b4b6e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
18 </package>
19 <package name="pixman" version="0.32.4">
20 <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
21 </package>
22 <package name="freetype" version="2.5.2">
23 <repository changeset_revision="58782940c411" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
24 </package>
25 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.0.3.tar.gz</action>
26 <action type="set_environment_for_install">
27 <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
28 <package name="readline" version="6.2" />
29 </repository>
30 <repository changeset_revision="db14a391648d" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
31 <package name="libpng" version="1.6.7" />
32 </repository>
33 <repository changeset_revision="b39299b4b6e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
34 <package name="cairo" version="1.12.14" />
35 </repository>
36 <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
37 <package name="pixman" version="0.32.4" />
38 </repository>
39 <repository changeset_revision="58782940c411" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
40 <package name="freetype" version="2.5.2" />
41 </repository>
42 </action>
10 <action type="download_by_url">http://cran.r-project.org/src/base/R-3/R-3.1.1.tar.gz</action> 43 <action type="download_by_url">http://cran.r-project.org/src/base/R-3/R-3.1.1.tar.gz</action>
11 <action type="move_directory_files"> 44 <action type="move_directory_files">
12 <source_directory>.</source_directory> 45 <source_directory>.</source_directory>
13 <destination_directory>$INSTALL_DIR</destination_directory> 46 <destination_directory>$INSTALL_DIR</destination_directory>
14 </action> 47 </action>
15 <action type="shell_command"> 48 <action type="shell_command">
16 cd $INSTALL_DIR; $INSTALL_DIR/configure --libdir=$INSTALL_DIR/lib --prefix=$INSTALL_DIR 49 cd $INSTALL_DIR;
50 export LDFLAGS="-L$PNG_LIBS -L$READLINE_LIB_PATH" &amp;&amp;
51 export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" &amp;&amp;
52 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" &amp;&amp;
53 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" &amp;&amp;
54 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" &amp;&amp;
55 export CFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" &amp;&amp;
56 export CXXFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" &amp;&amp;
57 export CPPFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" &amp;&amp;
58 $INSTALL_DIR/configure --with-tcltk \
59 --with-blas \
60 --with-lapack \
61 --with-readline \
62 --with-cairo \
63 --with-libpng \
64 --without-x \
65 --enable-R-shlib \
66 --disable-R-framework \
67 --libdir=$INSTALL_DIR/lib \
68 --prefix=$INSTALL_DIR
17 </action> 69 </action>
18 <action type="shell_command">make -C $INSTALL_DIR</action> 70 <action type="shell_command">make -C $INSTALL_DIR</action>
19 </actions> 71 </actions>
20 <action type="set_environment"> 72 <action type="set_environment">
21 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/doc</environment_variable> 73 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/doc</environment_variable>