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comparison napq.xml @ 28:6107b74eeb11 default tip

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improved documentation
author pieter.lukasse@wur.nl
date Fri, 30 Jan 2015 14:53:10 +0100
parents 34c4e7e0f23b
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27:34c4e7e0f23b 28:6107b74eeb11
18 -outReportPicturesPath $htmlReportFile.files_path 18 -outReportPicturesPath $htmlReportFile.files_path
19 </command> 19 </command>
20 20
21 <inputs> 21 <inputs>
22 22
23 <repeat name="identificationFileList" title="Peptide identification files" help="Set of MS/MS peptide identification files that have some form of quantification data coupled to it (e.g. MSE identifications&amp;intensity)."> 23 <repeat name="identificationFileList" title="(Filtered) Peptide identification files" help="Set of MS/MS peptide identification files that have some form of
24 <param name="identificationsFile" type="data" format="apml,mzidentml,prims.fileset.zip" label="Identifications file (APML or MZIDENTML or MZIDENTML fileSet)" /> 24 quantification data coupled to it (e.g. MSE identifications&amp;intensity). This list of peptide identifications is
25 preferably pre-processed by a tool (e.g. MsFilt) that filters out as much as possible false-positive peptide identifications.">
26 <param name="identificationsFile" type="data" format="apml,prims.fileset.zip" label="Identifications file ([APML] or [MZIDENTML fileSet])"
27 help="When using MsFilt, select MsFilt's APML output file here."/>
25 </repeat> 28 </repeat>
26 29
27 <param name="namingConventionCodesForSamples" type="text" size="100" value="" 30 <param name="namingConventionCodesForSamples" type="text" size="100" value=""
28 label="Part of run/file name that identifies the sample" 31 label="Part of run/file name that identifies the sample"
29 help="Add the CSV list of codes that occur in the file names 32 help="Add the CSV list of codes that occur in the file names