Mercurial > repos > pieterlukasse > prims_proteomics

comparison sedmat.xml @ 6:d1edc7971d48

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fixes in tool forms (<when> tags)
author pieter.lukasse@wur.nl
date Fri, 31 Jan 2014 12:11:34 +0100
parents d50f079096ee
children 08e93cd411b9
comparison
equal deleted inserted replaced
5:5d99c9d0615d 6:d1edc7971d48
87 <conditional name="matchOnNamingConvention"> 87 <conditional name="matchOnNamingConvention">
88 <param name="match" type="boolean" truevalue="Yes" falsevalue="No" checked="false" label="Match using naming convention" help="Use a list of codes that occur in the file names and that link them together."/> 88 <param name="match" type="boolean" truevalue="Yes" falsevalue="No" checked="false" label="Match using naming convention" help="Use a list of codes that occur in the file names and that link them together."/>
89 <when value="Yes"> 89 <when value="Yes">
90 <param name="namingConventionCodesForMatching" type="text" size="100" value="" label="List of codes in naming convention" help="Add the CSV list of codes that occur in the file names and that link them together. E.g. '_F1,_F2,_F3,etc.'"/> 90 <param name="namingConventionCodesForMatching" type="text" size="100" value="" label="List of codes in naming convention" help="Add the CSV list of codes that occur in the file names and that link them together. E.g. '_F1,_F2,_F3,etc.'"/>
91 </when> 91 </when>
92 <when value="No">
93 </when>
92 </conditional> 94 </conditional>
93 95
94 <param name="chargeStatesToGenerate" type="select" display="checkboxes" multiple="true" label="Generate extra charge states" help="The selected charge states will be generated for each MS2 feature "> 96 <param name="chargeStatesToGenerate" type="select" display="checkboxes" multiple="true" label="Generate extra charge states" help="The selected charge states will be generated for each MS2 feature ">
95 <option value="1" selected="true">1</option> 97 <option value="1" selected="true">1</option>
96 <option value="2" selected="true">2</option> 98 <option value="2" selected="true">2</option>
107 <param name="mStart" optional="false" type="integer" size="10" value="100" label="Set m/z start " /> 109 <param name="mStart" optional="false" type="integer" size="10" value="100" label="Set m/z start " />
108 <param name="mEnd" optional="false" type="integer" size="10" value="1000" label="Set m/z end " /> 110 <param name="mEnd" optional="false" type="integer" size="10" value="1000" label="Set m/z end " />
109 <param name="rtStart" optional="false" type="integer" size="10" value="10" label="Set rention time start (minutes) " /> 111 <param name="rtStart" optional="false" type="integer" size="10" value="10" label="Set rention time start (minutes) " />
110 <param name="rtEnd" optional="false" type="integer" size="10" value="20" label="Set rention time end (minutes) " /> 112 <param name="rtEnd" optional="false" type="integer" size="10" value="20" label="Set rention time end (minutes) " />
111 <param name="filterSourceName" type="text" size="100" value="" label="Restrict matching to a specific subset of the files " help="Part of a file name that occurs in both a ms1 and ms2 file (e.g. 'RibO_1_msE1')"/> 113 <param name="filterSourceName" type="text" size="100" value="" label="Restrict matching to a specific subset of the files " help="Part of a file name that occurs in both a ms1 and ms2 file (e.g. 'RibO_1_msE1')"/>
114 </when>
115 <when value="No">
112 </when> 116 </when>
113 </conditional> 117 </conditional>
114 118
115 </inputs> 119 </inputs>
116 <outputs> 120 <outputs>