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author pieter.lukasse@wur.nl
date Wed, 08 Jan 2014 11:39:16 +0100
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1 PRIMS-proteomics toolset & Galaxy wrappers
2 ==========================================
3
4 Proteomics module of Plant Research International's Mass Spectrometry (PRIMS) toolsuite.
5 This toolset consists of custom tools to enable data processing and
6 protein inference for labeled and label-free Mass Spectrometry proteomics data.
7
8 Can be used in combination with PRIMS-MASSCOMB (prims_masscomb package) and
9 with PRIMV-visualization (primv_visualization package).
10
11 Copyright 2010-2013 by Pieter Lukasse, Plant Research International (PRI),
12 Wageningen, The Netherlands. All rights reserved. See the license text below.
13
14 Galaxy wrappers and installation are available from the Galaxy Tool Shed at:
15 http://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_proteomics
16
17 History
18 =======
19
20 ============== ======================================================================
21 Date Changes
22 -------------- ----------------------------------------------------------------------
23 January 2014 * first release via Tool Shed
24 November 2013 * multiple tools used internally at PRI
25 end 2011 * first tool
26 ============== ======================================================================
27
28 Tool Versioning
29 ===============
30
31 PRIMS tools will have versions of the form X.Y.Z. Versions
32 differing only after the second decimal should be completely
33 compatible with each other. Breaking changes should result in an
34 increment of the number before and/or after the first decimal. All
35 tools of version less than 1.0.0 should be considered beta.
36
37
38 Bug Reports & other questions
39 =============================
40
41 For the time being issues can be reported via the contact form at:
42 http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm
43
44 Developers, Contributions & Collaborations
45 ==========================================
46
47 If you wish to join forces and collaborate on some of the
48 tools do not hesitate to contact Pieter Lukasse via the contact form above.
49
50
51 License (Apache, Version 2.0)
52 =============================
53
54 Copyright 2013 Pieter Lukasse, Plant Research International (PRI).
55
56 Licensed under the Apache License, Version 2.0 (the "License");
57 you may not use this software except in compliance with the License.
58 You may obtain a copy of the License at
59
60 http://www.apache.org/licenses/LICENSE-2.0
61
62 Unless required by applicable law or agreed to in writing, software
63 distributed under the License is distributed on an "AS IS" BASIS,
64 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
65 See the License for the specific language governing permissions and
66 limitations under the License.
67