PRIMS-workflows for Galaxy
==========================

Workflows module of Plant Research International's Mass Spectrometry (PRIMS) 
solution using a combination of tools from different packages, including: 

* PRIMS-proteomics (prims_proteomics)
* PRIMS-MASSCOMB (prims_masscomb) 
* PRIMV-visualization (primv_visualization)

Copyright 2010-2013 by Pieter Lukasse, Plant Research International (PRI), 
Wageningen, The Netherlands. All rights reserved. See the license text below.

Galaxy installation is available from the Galaxy Tool Shed at:
http://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_workflows

NB: after installing the prims_workflows Tool Shed repository, you should still 
import the desired workflows from the installed repository to make them active in 
your local Galaxy environment. 
See https://wiki.galaxyproject.org/ToolShedWorkflowSharing#Finding_workflows_in_tool_shed_repositories
for more details. 

History
=======

============== ======================================================================
Date            Changes
-------------- ----------------------------------------------------------------------
January 2014   * first release via Tool Shed 

============== ======================================================================

Tool Versioning
===============

PRI tools used in the workflows will have versions of the form X.Y.Z. 
Versions differing only after the second decimal should be completely
compatible with each other. Breaking changes should result in an
increment of the number before and/or after the first decimal. All
tools of version less than 1.0.0 should be considered beta.


Bug Reports & other questions
=============================

For the time being issues can be reported via the contact form at:
http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm

Developers, Contributions & Collaborations 
==========================================

If you wish to join forces and collaborate on some of the 
tools do not hesitate to contact Pieter Lukasse via the contact form above. 


License (Apache, Version 2.0)
=============================

Copyright 2013 Pieter Lukasse, Plant Research International (PRI). 

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this software except in compliance with the License.
You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.