--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/LICENSE	Wed Jan 08 11:44:26 2014 +0100
@@ -0,0 +1,202 @@
+
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/NOTICE	Wed Jan 08 11:44:26 2014 +0100
@@ -0,0 +1,16 @@
+PRIMS-workflows for Galaxy
+==========================
+
+Workflows module of Plant Research International's Mass Spectrometry (PRIMS) 
+solution using a combination of tools from different packages, including: 
+
+* PRIMS-proteomics (prims_proteomics)
+* PRIMS-MASSCOMB (prims_masscomb) 
+* PRIMV-visualization (primv_visualization) 
+
+Copyright 2010-2013 by Pieter Lukasse, Plant Research International (PRI), 
+Wageningen, The Netherlands. All rights reserved. See the license text below.
+
+Galaxy wrappers and installation are available from the Galaxy Tool Shed at:
+http://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_workflows
+

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PRIMS_iTRAQ_labeled_data.ga	Wed Jan 08 11:44:26 2014 +0100
@@ -0,0 +1,313 @@
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+            "inputs": [
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+                    "name": "Input Dataset"
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+            "outputs": [], 
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+            "tool_errors": null, 
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+            "inputs": [
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+            "name": "X!Tandem", 
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+            "name": "Quantiline", 
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+            "tool_errors": null, 
+            "tool_id": "testtoolshed.g2.bx.psu.edu/repos/pieterlukasse/primv_visualization/cytoexport1/1.0.2", 
+            "tool_state": "{\"__page__\": 0, \"csvDataFile\": \"null\", \"__rerun_remap_job_id__\": null, \"configInputMode\": \"{\\\"vizMapPropsFile\\\": \\\"/com/pri/cytoexport/resources/quantifere_network_layout.props\\\", \\\"type\\\": \\\"existingTemplate\\\", \\\"alternativeTableImportJsonFile\\\": \\\"/com/pri/cytoexport/resources/quantifere_network_config.json\\\", \\\"__current_case__\\\": 0}\", \"chromInfo\": \"\\\"/home/lukas007/galaxy-test/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"vizStyleName\": \"\\\"default\\\"\"}", 
+            "tool_version": "1.0.2", 
+            "type": "tool", 
+            "user_outputs": []
+        }
+    }
+}
\ No newline at end of file

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.rst	Wed Jan 08 11:44:26 2014 +0100
@@ -0,0 +1,72 @@
+PRIMS-workflows for Galaxy
+==========================
+
+Workflows module of Plant Research International's Mass Spectrometry (PRIMS) 
+solution using a combination of tools from different packages, including: 
+
+* PRIMS-proteomics (prims_proteomics)
+* PRIMS-MASSCOMB (prims_masscomb) 
+* PRIMV-visualization (primv_visualization)
+
+Copyright 2010-2013 by Pieter Lukasse, Plant Research International (PRI), 
+Wageningen, The Netherlands. All rights reserved. See the license text below.
+
+Galaxy installation is available from the Galaxy Tool Shed at:
+http://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_workflows
+
+NB: after installing the prims_workflows Tool Shed repository, you should still 
+import the desired workflows from the installed repository to make them active in 
+your local Galaxy environment. 
+See https://wiki.galaxyproject.org/ToolShedWorkflowSharing#Finding_workflows_in_tool_shed_repositories
+for more details. 
+
+History
+=======
+
+============== ======================================================================
+Date            Changes
+-------------- ----------------------------------------------------------------------
+January 2014   * first release via Tool Shed 
+
+============== ======================================================================
+
+Tool Versioning
+===============
+
+PRI tools used in the workflows will have versions of the form X.Y.Z. 
+Versions differing only after the second decimal should be completely
+compatible with each other. Breaking changes should result in an
+increment of the number before and/or after the first decimal. All
+tools of version less than 1.0.0 should be considered beta.
+
+
+Bug Reports & other questions
+=============================
+
+For the time being issues can be reported via the contact form at:
+http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm
+
+Developers, Contributions & Collaborations 
+==========================================
+
+If you wish to join forces and collaborate on some of the 
+tools do not hesitate to contact Pieter Lukasse via the contact form above. 
+
+
+License (Apache, Version 2.0)
+=============================
+
+Copyright 2013 Pieter Lukasse, Plant Research International (PRI). 
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this software except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+     
\ No newline at end of file