Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

comparison amplicon_analysis_pipeline.xml @ 3:3ab198df8f3f draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
author pjbriggs
date Thu, 18 Oct 2018 09:18:04 -0400
parents 43d6f81bc667
children 86a12d75ebe4
comparison
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2:43d6f81bc667 3:3ab198df8f3f
1 <tool id="amplicon_analysis_pipeline" name="Amplicon Analysis Pipeline" version="1.2.2.0"> 1 <tool id="amplicon_analysis_pipeline" name="Amplicon Analysis Pipeline" version="1.2.3.0">
2 <description>analyse 16S rRNA data from Illumina Miseq paired-end reads</description> 2 <description>analyse 16S rRNA data from Illumina Miseq paired-end reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.2.2">amplicon_analysis_pipeline</requirement> 4 <requirement type="package" version="1.2.3">amplicon_analysis_pipeline</requirement>
5 <requirement type="package" version="1.11">cutadapt</requirement>
6 <requirement type="package" version="1.33">sickle</requirement>
7 <requirement type="package" version="27-08-2013">bioawk</requirement>
8 <requirement type="package" version="2.8.1">pandaseq</requirement>
9 <requirement type="package" version="3.5.0">spades</requirement>
10 <requirement type="package" version="0.11.3">fastqc</requirement>
11 <requirement type="package" version="1.8.0">qiime</requirement>
12 <requirement type="package" version="2.2.26">blast</requirement>
13 <requirement type="package" version="0.2.4">fasta-splitter</requirement>
14 <requirement type="package" version="2.2">rdp-classifier</requirement>
15 <requirement type="package" version="3.2.0">R</requirement>
16 <requirement type="package" version="1.1.3">vsearch</requirement>
17 <requirement type="package" version="2010-04-29">microbiomeutil</requirement>
18 <requirement type="package">fasta_number</requirement>
19 </requirements> 5 </requirements>
20 <stdio> 6 <stdio>
21 <exit_code range="1:" /> 7 <exit_code range="1:" />
22 </stdio> 8 </stdio>
23 <command><![CDATA[ 9 <command><![CDATA[